Lab Sequence Data

All paths specified are on Merlot.

  • Directory name / Run name
    • Description
    • Machine
    • PATH
    • People involved
    • Date

     

  • SG_103_20140218
    • Seagrass 16S
    • MiSEq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang, Hannah Holland-Moritz, John Zhang
    • February 2014
  • HollyG_pacbio_20140602
    • Indoor air
    • Pacbio 2 smrtcells
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Holly Ganz
    • June 2014
  • 18s_euk_NPRB_20140429
    • NPRB 18S Bad run
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Holly Bik, Alexis Walker
    • April 2014
  • 18s_euk_NPRB_20140513
    • NPRB 18S REDO
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Holly Bik, Alexis Walker
    • May 2014
  • A_zivkovic
    • Food 16S study
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang
  • AQUEXP1
    • Aquarium 16S
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • David Coil, Holly Bik, Jenna Morgan Lang, Undergrads
    • May 2013
  • AQUEXP2
    • Aquarium 16S
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • David Coil, Holly Bik, Jenna Morgan Lang, Undergrads
    • September 2013
  • AQUEXP3_1
    • Aquarium 16S
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • David Coil, Holly Bik, Jenna Morgan Lang, Undergrads
  • AQUEXP3_2
    • Aquarium 16S
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • David Coil, Holly Bik, Jenna Morgan Lang, Undergrads
    • December 2012
  • AQUEXP4
    • Aquarium 16S
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • David Coil, Holly Bik, Jenna Morgan Lang, Undergrads
    • April 2014
  • artmat-1
    • Arctic microbial mats metagenomics
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Megan Krusor, Kate Wall
    • March 2013
  • Corn_Mucilage_Miseq_20131209
    • Corn Mucilage Metagenome
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Srijak Bhatnagar, Guillaume Jospin, John Zhang
    • December 2013
  • CT_16s
    • Compost Tea 16S
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang, Farmer?
    • May 2013
  • DLTN_101_20140224
    • Pink Berry? Fly?
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Lizzy Willbanks, Marissano James
    • February 2014
  • DM_project
    • “Dog Mouth project (DM256, 257,258)”
    • ?
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Aaron Darling, John Zhang
    • April 2013
  • FA_ITS_101_20140516
    • Seqgrass ITS primers
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang, John Zhang
    • May 2014
  • FA_ITS_101_badrun
    • SeqGrass ITS primers (bad run)
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang, John Zhang
    • April 2014
  • Fly_poop
    • Fly poop Metagenomics
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang, Angus James Chandler, John Zhang
    • June 2013
  • Fly_poop_2
    • Fly poop Metagenomics
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang, Angus James Chandler, John Zhang
    • August 2013
  • Fly_poop_3
    • Fly poop 16S
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang, Angus James Chandler, John Zhang
    • October 2013
  • Hi-C_pinkberries_20131217
    • Pink Berry Hi-C
    • HiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Lizzy Willbanks, Chris Beitel, John Zhang
    • December 2013
  • HMSB
    • Food 16S study REDO
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang
  • Holly_18s_Chimera
    • 18S inline barcode test
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Holly Bik, Aaron Darling, Guillaume Jospin
  • Holly_Russell_data
    • “Xeno, Fish, others”
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Holly Bik, Russell Netches, John Zhang
  • Jason_oct_2013
    • Ecoli Isolates
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jason Adams, David Coil, Guillaume Jospin, John Zhang
    • October 2013
  • Jason_Pacbio_20131220
    • Ecoli Isolates
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jason Adams, David Coil, Guillaume Jospin
    • December 2013
  • Jason_sept_2013
    • Ecoli Isolates
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jason Adams, David Coil, Guillaume Jospin, John Zhang
    • September 2013
  • Jason_sept_2013_2
    • Ecoli Isolates
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jason Adams, David Coil, Guillaume Jospin, John Zhang
    • September 2013
  • Lizzy_1
    • ???
    • ?
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Lizzy Willbanks
    • February 2013
  • Lizzy_MiSeq_Feb_12_2013
    • Pink berries
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Lizzy Willbanks, John Zhang
    • February 2013
  • Lizzy_moleculo
    • HiSeq moleculo data
    • HiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Lizzy Willbanks
    • Feb 2013
  • Lizzy_pacbio
    • PinkBerries. 50 Pacbio runs
    • Pacbio
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Lizzy Willbanks
    • May 2014
  • MiSeq_Worm_102_20131205
    • Eisenia Bad run
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • David Coil, Guillaume Jospin, John Zhang
    • December 2013
  • MiSeq_Worm_102_20131205_redo
    • Eisenia Redo
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • David Coil, Guillaume Jospin, John Zhang
    • December 2013
  • NPRB_16s_20140521
    • NPRB 16S + Built environment samples
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Holly Bik, Holly Ganz
    • May 2014
  • NPRB_metagenomes_20140513
    • NPRB metagenomics
    • HiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Holly Bik, Alexis Walker
    • May 2014
  • Sample_Jason1
    • Ecoli Isolates
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jason Adams, David Coil, Guillaume Jospin, John Zhang
    • January 2013
  • SG_1_March_28_2013
    • Seagrass 16S
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang, Hannah Holland-Moritz, John Zhang
    • March 2013
  • SG104_plus
    • Seagrass 16S
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang, Hannah Holland-Moritz, John Zhang
    • March 2014
  • Sima_20130730
    • Ecoli isolates
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Sima Tokajian, David Coil, Guillaume Jospin
    • July 2013
  • Sima_Aur
    • Staph Aureus isolates
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Sima Tokajian, David Coil, Guillaume Jospin
    • August 2013
  • Sima_PYO
    • Streptococcus Pyogenes isolates
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Sima Tokajian, David Coil, Guillaume Jospin
    • August 2013
  • Sloan_projects
    • Aquarium project + Flypoop metagenome
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • David Coil, Jenna Morgan Lang
    • March 2013
  • ST_1_March_28_2013
    • Staph Aureus isolates
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Sima Tokajian, David Coil, Guillaume Jospin
    • March 2013
  • UOP_Jenna
    • Bay area contaminated water
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Jenna Morgan Lang
  • Xeno_MiSeq300_20131213
    • Xenophyophore sequencing
    • MiSeq
    • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
    • Holly Bik
    • December 2013

Corn Samples

  • 16S_REDO
    • 16S redo
    • MiSeq
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
  • 16S_run1
    • 16S
    • MiSeq
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
  • 18S_Feb_2013
    • 18S tests
    • MiSeq
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
    • March 2013
  • BGI_halfruns
    • Broken BGI runs
    • ??
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
  • Corn_whole_genome_HiSeq
    • Corn Whole genome
    • HiSeq
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
  • Corn_whole_genome_MiSeq_test
    • Corn Whole genome
    • MiSeq
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
  • HiSeq_Corn_Seeds_metagenomes_BGI
    • Seed metagenome
    • BGI HiSeq
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
  • MiSeq_Corn_plant_mucilage_soil
    • “Plant, Mucilage, Soil metagenomes”
    • MiSeq
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
  • MiSeq_Corn_Seeds_metagenomes_GC
    • Seed metagenomes
    • MiSeq
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
  • Mucilage_MiSeq_test
    • Mucilage MiSeq test
    • MiSeq
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
  • Original3_samples
    • “Original samples (Plant, Mucilage, Soil)”
    • JCVI
    • /share/eisen-z2/gjospin/Corn_sequencing_runs/
    • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin

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