Lab Sequence Data

All paths specified are on Merlot.

• Directory name / Run name
  • Description
  • Machine
  • PATH
  • People involved
  • Date

   

• SG_103_20140218
  • Seagrass 16S
  • MiSEq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang, Hannah Holland-Moritz, John Zhang
  • February 2014
• HollyG_pacbio_20140602
  • Indoor air
  • Pacbio 2 smrtcells
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Holly Ganz
  • June 2014
• 18s_euk_NPRB_20140429
  • NPRB 18S Bad run
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Holly Bik, Alexis Walker
  • April 2014
• 18s_euk_NPRB_20140513
  • NPRB 18S REDO
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Holly Bik, Alexis Walker
  • May 2014
• A_zivkovic
  • Food 16S study
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang
• AQUEXP1
  • Aquarium 16S
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • David Coil, Holly Bik, Jenna Morgan Lang, Undergrads
  • May 2013
• AQUEXP2
  • Aquarium 16S
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • David Coil, Holly Bik, Jenna Morgan Lang, Undergrads
  • September 2013
• AQUEXP3_1
  • Aquarium 16S
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • David Coil, Holly Bik, Jenna Morgan Lang, Undergrads
• AQUEXP3_2
  • Aquarium 16S
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • David Coil, Holly Bik, Jenna Morgan Lang, Undergrads
  • December 2012
• AQUEXP4
  • Aquarium 16S
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • David Coil, Holly Bik, Jenna Morgan Lang, Undergrads
  • April 2014
• artmat-1
  • Arctic microbial mats metagenomics
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Megan Krusor, Kate Wall
  • March 2013
• Corn_Mucilage_Miseq_20131209
  • Corn Mucilage Metagenome
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Srijak Bhatnagar, Guillaume Jospin, John Zhang
  • December 2013
• CT_16s
  • Compost Tea 16S
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang, Farmer?
  • May 2013
• DLTN_101_20140224
  • Pink Berry? Fly?
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Lizzy Willbanks, Marissano James
  • February 2014
• DM_project
  • “Dog Mouth project (DM256, 257,258)”
  • ?
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Aaron Darling, John Zhang
  • April 2013
• FA_ITS_101_20140516
  • Seqgrass ITS primers
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang, John Zhang
  • May 2014
• FA_ITS_101_badrun
  • SeqGrass ITS primers (bad run)
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang, John Zhang
  • April 2014
• Fly_poop
  • Fly poop Metagenomics
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang, Angus James Chandler, John Zhang
  • June 2013
• Fly_poop_2
  • Fly poop Metagenomics
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang, Angus James Chandler, John Zhang
  • August 2013
• Fly_poop_3
  • Fly poop 16S
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang, Angus James Chandler, John Zhang
  • October 2013
• Hi-C_pinkberries_20131217
  • Pink Berry Hi-C
  • HiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Lizzy Willbanks, Chris Beitel, John Zhang
  • December 2013
• HMSB
  • Food 16S study REDO
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang
• Holly_18s_Chimera
  • 18S inline barcode test
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Holly Bik, Aaron Darling, Guillaume Jospin
• Holly_Russell_data
  • “Xeno, Fish, others”
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Holly Bik, Russell Netches, John Zhang
• Jason_oct_2013
  • Ecoli Isolates
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jason Adams, David Coil, Guillaume Jospin, John Zhang
  • October 2013
• Jason_Pacbio_20131220
  • Ecoli Isolates
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jason Adams, David Coil, Guillaume Jospin
  • December 2013
• Jason_sept_2013
  • Ecoli Isolates
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jason Adams, David Coil, Guillaume Jospin, John Zhang
  • September 2013
• Jason_sept_2013_2
  • Ecoli Isolates
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jason Adams, David Coil, Guillaume Jospin, John Zhang
  • September 2013
• Lizzy_1
  • ???
  • ?
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Lizzy Willbanks
  • February 2013
• Lizzy_MiSeq_Feb_12_2013
  • Pink berries
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Lizzy Willbanks, John Zhang
  • February 2013
• Lizzy_moleculo
  • HiSeq moleculo data
  • HiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Lizzy Willbanks
  • Feb 2013
• Lizzy_pacbio
  • PinkBerries. 50 Pacbio runs
  • Pacbio
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Lizzy Willbanks
  • May 2014
• MiSeq_Worm_102_20131205
  • Eisenia Bad run
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • David Coil, Guillaume Jospin, John Zhang
  • December 2013
• MiSeq_Worm_102_20131205_redo
  • Eisenia Redo
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • David Coil, Guillaume Jospin, John Zhang
  • December 2013
• NPRB_16s_20140521
  • NPRB 16S + Built environment samples
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Holly Bik, Holly Ganz
  • May 2014
• NPRB_metagenomes_20140513
  • NPRB metagenomics
  • HiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Holly Bik, Alexis Walker
  • May 2014
• Sample_Jason1
  • Ecoli Isolates
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jason Adams, David Coil, Guillaume Jospin, John Zhang
  • January 2013
• SG_1_March_28_2013
  • Seagrass 16S
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang, Hannah Holland-Moritz, John Zhang
  • March 2013
• SG104_plus
  • Seagrass 16S
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang, Hannah Holland-Moritz, John Zhang
  • March 2014
• Sima_20130730
  • Ecoli isolates
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Sima Tokajian, David Coil, Guillaume Jospin
  • July 2013
• Sima_Aur
  • Staph Aureus isolates
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Sima Tokajian, David Coil, Guillaume Jospin
  • August 2013
• Sima_PYO
  • Streptococcus Pyogenes isolates
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Sima Tokajian, David Coil, Guillaume Jospin
  • August 2013
• Sloan_projects
  • Aquarium project + Flypoop metagenome
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • David Coil, Jenna Morgan Lang
  • March 2013
• ST_1_March_28_2013
  • Staph Aureus isolates
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Sima Tokajian, David Coil, Guillaume Jospin
  • March 2013
• UOP_Jenna
  • Bay area contaminated water
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Jenna Morgan Lang
• Xeno_MiSeq300_20131213
  • Xenophyophore sequencing
  • MiSeq
  • /share/eisen-z2/gjospin/Slims_Eisenlab_backup
  • Holly Bik
  • December 2013

Corn Samples

• 16S_REDO
  • 16S redo
  • MiSeq
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
• 16S_run1
  • 16S
  • MiSeq
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
• 18S_Feb_2013
  • 18S tests
  • MiSeq
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
  • March 2013
• BGI_halfruns
  • Broken BGI runs
  • ??
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
• Corn_whole_genome_HiSeq
  • Corn Whole genome
  • HiSeq
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
• Corn_whole_genome_MiSeq_test
  • Corn Whole genome
  • MiSeq
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
• HiSeq_Corn_Seeds_metagenomes_BGI
  • Seed metagenome
  • BGI HiSeq
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
• MiSeq_Corn_plant_mucilage_soil
  • “Plant, Mucilage, Soil metagenomes”
  • MiSeq
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
• MiSeq_Corn_Seeds_metagenomes_GC
  • Seed metagenomes
  • MiSeq
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
• Mucilage_MiSeq_test
  • Mucilage MiSeq test
  • MiSeq
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin, John Zhang
• Original3_samples
  • “Original samples (Plant, Mucilage, Soil)”
  • JCVI
  • /share/eisen-z2/gjospin/Corn_sequencing_runs/
  • Srijak Bhatnagar, Cassie Ettinger, Guillaume Jospin