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Jonathan Eisen's Lab

All microbes, all the time. May the microbes be ever in your favor.

  • Home
  • About
    • Jonathan Eisen Bio
    • J. Eisen CV 2023
    • Orcid
    • Disclosures
    • Funding
    • Questions for Jonathan Eisen (Advice, Background, Projects, etc)
    • More About Jonathan Eisen
  • People
  • Projects
    • Seagrass Microbiomes
  • Past Projects
    • Istmobiome
    • microBEnet
    • Genomic Encyclopedia of Bacteria and Archaea (GEBA)
    • Corn Microbiome
  • Publications
    • Eisen Publications
    • Eisen Pubs on Google Scholar
    • Eisen Publications Organized By Topic Areas
    • Publications Table
    • Publications List w/ notes (from 2018)
    • Evolution Textbook
  • Social Media and Regular Media
    • Press Coverage
    • Eisen Lab Blog
    • Eisen’s Tree of Life Blog
    • microBEnet Blog
    • LinkedIn
    • Twitter
    • Instagram
    • Mastodon
    • Threads
  • Education/Outreach
    • Eisen Talks and Presentations
    • Jonathan Eisen’s TED Talk on “Meet Your Microbes”
    • Jonathan Eisen Talks on Youtube
    • Eisen talks on Slideshare
    • Gut Check: The Microbiome Game
  • Products
    • Software
      • A5 Assembly Pipeline
      • AMPHORA
      • APIS
      • Biotorrents
      • ComboDB
      • CompostBin
      • Mauve Assembly Metrics
      • PhyloSift
      • phylOTU
      • Pique
      • STAP
      • OTU Hunter
      • WATERS
      • Zorro
    • Lab Data
      • Lab Sequence Data
      • Eisen Lab Data at Figshare
      • Sifting Families: SFams
      • Darwin’s Finch Genome Data at Figshare
      • Data from Morgan et al. metagenomic simulation
      • Haloarchaea Data from Lynch et al. 2012
      • Data from Wu et al. 2011 Stalking 4th Domain paper
    • Other
      • 16S PCR Protocol
      • Gut Check: The Microbiome Game
      • Jonathan Eisen’s Figshare
  • Misc.
    • iNaturalist
    • Photography
    • Retroblogging Meetings and Seminars: Posting Scans of Notes
    • Miscellaneous Notes and Scans
Jonathan Eisen's Lab

More About Jonathan Eisen

Bios and Background

  • https://en.wikipedia.org/wiki/Jonathan_Eisen
  • Linked In

Project Web Sites

  • microBEnet
  • Seagrass Microbiome
  • ISTMobiome
  • ICIS

Publications and Work Products

  • Google Scholar
  • http://evolution-textbook.org
  • https://www.slideshare.net/phylogenomics
  • http://academic.research.microsoft.com/Author/18821471/jonathan-a-eisen
  • https://f1000.com/prime/thefaculty/member/3877757336072675
  • https://www.amazon.com/Jonathan-A.-Eisen/e/B002BMIBGU
  • NCBI CV

Nature and Photography

  • iNaturalist Profile
  • eBird
  • Instagram @phylogenomics
  • Picasa Web Albums on Wayback Machine

Videos

  • youtube.com/c/JonathanEisen

Social Media

  • Tree of Life Blog
  • Davis, CA Blog
  • http://gplus.to/jonathaneisen
  • Posterous Blog on Wayback Machine
  • Twylah Site on Wayback Machine
  • Quora Profile
  • Research Blogging

Journals for which I have some role

  • PLOS Biology
  • PLOS Computational Biology
  • mSystems
  • BioRXiv
  • PeerJ

Old Web Sites

  • https://openwetware.org/wiki/Eisen
  • https://profile.typepad.com/jonathaneisen

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RSS Lab Blog

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  • New paper out from studies of metagenomes from Tramway Ridge in Antarctica
  • Talk on Sequencing and Microbes …
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  • My talk for #LAMG2024 – Lake Arrowhead Microbial Genomics 2024 meeting
  • How sweet it is – forty bonus years of life, and still going
  • Cooper’s hawk calling at UC Davis – found with a little help from Merlin
  • A Semi-Random Day of Mammals

RSS The Tree of Life Blog

  • Avoiding shoulder surgery for now ...
  • Sept 13 Pics from Yolo Bypass
  • Sept. 12 pics from Yolo Bypass
  • Sept. 11 pics from Yolo Bypass
  • Sept 10 - Beaver at UC Davis
  • Sept 10 pics from UC Davis
  • Sept 10 At UC Davis Riparian
  • Sept. 7 - Rufous Hummingbird in my yard
  • Yellow billed magpie in Davis Sept. 5
  • Sept. 4 Rufous Hummingbird in my yard in Davis, CA

Lab Blog Archives

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  • Home
  • About
    • Jonathan Eisen Bio
    • J. Eisen CV 2023
    • Orcid
    • Disclosures
    • Funding
    • Questions for Jonathan Eisen (Advice, Background, Projects, etc)
    • More About Jonathan Eisen
  • People
  • Projects
    • Seagrass Microbiomes
  • Past Projects
    • Istmobiome
    • microBEnet
    • Genomic Encyclopedia of Bacteria and Archaea (GEBA)
    • Corn Microbiome
  • Publications
    • Eisen Publications
    • Eisen Pubs on Google Scholar
    • Eisen Publications Organized By Topic Areas
    • Publications Table
    • Publications List w/ notes (from 2018)
    • Evolution Textbook
  • Social Media and Regular Media
    • Press Coverage
    • Eisen Lab Blog
    • Eisen’s Tree of Life Blog
    • microBEnet Blog
    • LinkedIn
    • Twitter
    • Instagram
    • Mastodon
    • Threads
  • Education/Outreach
    • Eisen Talks and Presentations
    • Jonathan Eisen’s TED Talk on “Meet Your Microbes”
    • Jonathan Eisen Talks on Youtube
    • Eisen talks on Slideshare
    • Gut Check: The Microbiome Game
  • Products
    • Software
      • A5 Assembly Pipeline
      • AMPHORA
      • APIS
      • Biotorrents
      • ComboDB
      • CompostBin
      • Mauve Assembly Metrics
      • PhyloSift
      • phylOTU
      • Pique
      • STAP
      • OTU Hunter
      • WATERS
      • Zorro
    • Lab Data
      • Lab Sequence Data
      • Eisen Lab Data at Figshare
      • Sifting Families: SFams
      • Darwin’s Finch Genome Data at Figshare
      • Data from Morgan et al. metagenomic simulation
      • Haloarchaea Data from Lynch et al. 2012
      • Data from Wu et al. 2011 Stalking 4th Domain paper
    • Other
      • 16S PCR Protocol
      • Gut Check: The Microbiome Game
      • Jonathan Eisen’s Figshare
  • Misc.
    • iNaturalist
    • Photography
    • Retroblogging Meetings and Seminars: Posting Scans of Notes
    • Miscellaneous Notes and Scans
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