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Jonathan Eisen's Lab

All microbes, all the time. May the microbes be ever in your favor.

  • Home
  • About
    • Disclosures
    • Jonathan Eisen Bio
    • Funding
    • Questions for Jonathan Eisen (Advice, Background, Projects, etc)
    • Eisen CV (Google Doc)
    • More About Jonathan Eisen
  • People
  • Projects
    • Istmobiome
    • Seagrass Microbiomes
  • Past Projects
    • microBEnet
    • SWAN (Studies of Women’s Health Across the Nation) Microbiome
    • Corn Microbiome
    • Genomic Encyclopedia of Bacteria and Archaea (GEBA)
  • Publications
    • Publications Table
    • Publications by Topic
      • Publications: Animal-Microbe Interactions
      • Publications: Phylogenomic and Computational Methods and Tools
      • Publications – Marine Symbioses and Microbiology
      • Publications – Phylogenetic Diversity of Genomes
      • Publications: Plants and Associated Microbes
    • Eisen Pubs on Google Scholar
    • Publications – Pubmed
    • Publications List w/ notes
    • Evolution Textbook
  • Social Media
    • Eisen Lab Blog
    • Eisen’s Tree of Life Blog
    • microBEnet Blog
    • Eisen’s Twitter
    • Eisen Lab on Twitter
  • Education/Outreach
    • Space Microbes
    • Eisen Lab in the News
    • Gut Check: The Microbiome Game
    • Bodega Applied Phylogenetics Course
    • UC Davis Courses
    • Undergrad Genome Project
    • Eisen Talks and Presentations
    • Jonathan Eisen’s TED Talk on “Meet Your Microbes”
    • Jonathan Eisen Talks on Youtube
    • Eisen talks on Slideshare
  • Products
    • Software
      • A5 Assembly Pipeline
      • AMPHORA
      • APIS
      • Biotorrents
      • ComboDB
      • CompostBin
      • Mauve Assembly Metrics
      • PhyloSift
      • phylOTU
      • Pique
      • STAP
      • OTU Hunter
      • WATERS
      • Zorro
    • Lab Data
      • Lab Sequence Data
      • Eisen Lab Data at Figshare
      • Sifting Families: SFams
      • Darwin’s Finch Genome Data at Figshare
      • Data from Morgan et al. metagenomic simulation
      • Haloarchaea Data from Lynch et al. 2012
      • Data from Wu et al. 2011 Stalking 4th Domain paper
    • Other
      • 16S PCR Protocol
      • Gut Check: The Microbiome Game
      • Jonathan Eisen’s Figshare
  • Misc.
    • Retroblogging Meetings and Seminars: Posting Scans of Notes
    • Miscellaneous Notes and Scans
Jonathan Eisen's Lab

Author: gjospin

Bioinformatics Engineer in Dr. Jonathan Eisen's lab at UCDavis.

Lab meeting July 23rd 2013

This week’s lab meeting will be lead by Jenna Morgan Lang who will talk about Microbes in Spaaaaaaaace.
We will meet in room 4202 of the genome center from 1:30 to 3pm.

Author gjospinPosted on July 22, 2013July 22, 2013Categories UncategorizedTags Lab MeetingLeave a comment on Lab meeting July 23rd 2013

Lab meeting. June 18th 2013

Nicholas Bokulich will be presenting for tomorrow’s lab meeting.
We will be meeting from 1:30 to 3pm in room 4202 of the Genome Center.

Author gjospinPosted on June 17, 2013Categories UncategorizedTags Lab MeetingLeave a comment on Lab meeting. June 18th 2013

Lab meeting June 4th 2013

Sima Tokajian will be presenting for this week’s lab meeting. The talk is titled “Molecular Epidemiology of Community Acquired Staphylococcus aureus”
We will meet in the Genome Center in room 4202 from 1:30 to 3pm.

Author gjospinPosted on June 3, 2013Categories UncategorizedTags Lab MeetingLeave a comment on Lab meeting June 4th 2013

No lab meeting May 21st 2013

Most of the lab is attending ASM, we will not be having lab meeting this week.

Author gjospinPosted on May 20, 2013Categories UncategorizedTags Lab MeetingLeave a comment on No lab meeting May 21st 2013

Lab meeting May 7th 2013

Hello,
We will have our weekly lab meeting this week from 1:30 to 3pm in room 4202 of the Genome Center.
Dongying Wu is presenting.

Author gjospinPosted on May 6, 2013Categories Misc.Tags Misc.Leave a comment on Lab meeting May 7th 2013

Lab meeting April 30th 2013

Dongying Wu will be presenting for this week’s lab meeting.
We are meeting in room 4202 of the Genome Center from 1:30 to 3pm.

Author gjospinPosted on April 29, 2013Categories UncategorizedTags Lab MeetingLeave a comment on Lab meeting April 30th 2013

Lab meeting April 23rd 2013

Lizzy Wilbanks will be presenting for this week’s lab meeting. We have room 4202 reserved from 2pm to 3:30 pm in the Genome Center.

Author gjospinPosted on April 22, 2013April 22, 2013Categories UncategorizedTags Lab MeetingLeave a comment on Lab meeting April 23rd 2013

Lab meeting April 9th 2013

We will be resuming our weekly lab meetings by hosting Holly’s collaborator, Wesley Grubbs from Pitch interactive. He will be talking about visualization software.
We will be meeting from 1:30 to 3pm in room 4202 of the Genome Center.

Author gjospinPosted on April 5, 2013Categories UncategorizedTags Lab MeetingLeave a comment on Lab meeting April 9th 2013

Lab meeting March 19th 2013

We will be having lab meeting tomorrow from 1:30 to 3pm in room 4202 of the genome center.
Russell Neches is presenting.

Author gjospinPosted on March 18, 2013Categories UncategorizedTags Lab MeetingLeave a comment on Lab meeting March 19th 2013

Lab meeting March 12th 2013

Ladan Doroud will be practicing her Qualifying Exam. We will be meeting from 1:30 to 3:00pm in room 4202 of the Genome Center.

Author gjospinPosted on March 11, 2013January 23, 2014Categories UncategorizedTags Lab MeetingLeave a comment on Lab meeting March 12th 2013

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RSS Lab Blog

  • New paper from Eisen Lab – on ” The Genome Encyclopedia of Spacecraft Associated Microbes (GESAM)” project 
  • New paper from Eisen lab and others … on challenges with relic RNA in SARS-CoV-2 environmental surveys
  • New preprint out from my lab and others about environmental monitoring for SARS-CoV-2 in schools and in part about how difficult this is
  • Article about Dr. Connie Rojas getting UC Davis Chancellor’s Postdoctoral Fellow Award
  • The tale of the blue soy products – from contaminated soy milk to a new publication
  • Post-Doc Position available in Ecology of Emerging Infectious Disease
  • The Benefits (and Occasional Drawbacks) of Integrating Evolutionary and Genomic Studies (talk video and slides)
  • New paper from the Eisen lab (with many others) on Global biogeography of chemosynthetic symbionts
  • News Stories about air filter testing for SARS-CoV-2 in Davis, CA schools
  • New collaborative paper out: Air versus Water Chilling of Chicken: a Pilot Study of Quality, Shelf-Life, Microbial Ecology, and Economics 

RSS The Tree of Life Blog

  • Another day to think, to pause, to ponder.
  • Responses to question about functional annotation of metagenomic reads
  • Panoramas from the past ...
  • Well, this is about as scammy / spammy as a journal can get ... putting me on an editorial board I did not agree to be on ...
  • Lake Arrowhead Microbial Genomics Meeting History
  • Wanted - comments on the current @ucdavis COVID plans
  • Best pics from Trip to Monterey - Day 1 - May 25, 2022
  • Videos about using the UCSC Genome Browser for analysis of SarsCOV2
  • Endosymbiosis Animations for "Biodiversity and the Tree of Life"
  • A good bye to my beloved Clover

RSS microBEnet blog

  • 2022 Microbiology of the Built Environment Gordon Research Meeting
  • BioBE Preprint: Controlled Chamber COVID Study
  • Job posting: Tenure-Track Faculty Position in Environmental Microbiology at Virginia Tech
  • Metagenomic Binning / Assembly
  • Wanted: Workers for the COVID19 Mass Testing Operations for UC Davis and Healthy Davis Together 
  • Open Postdoc Position in Finland
  • Open Postdoc Position at University of Oregon BioBE
  • Dust may be an efficient matrix for environmental monitoring of SARS-CoV-2
  • Compilation of guidance (from a few sources) on School Reopening
  • Compiling Information about COVID19 transmission, masks, filtration, schools, etc.

Lab Blog Archives

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  • Home
  • About
    • Disclosures
    • Jonathan Eisen Bio
    • Funding
    • Questions for Jonathan Eisen (Advice, Background, Projects, etc)
    • Eisen CV (Google Doc)
    • More About Jonathan Eisen
  • People
  • Projects
    • Istmobiome
    • Seagrass Microbiomes
  • Past Projects
    • microBEnet
    • SWAN (Studies of Women’s Health Across the Nation) Microbiome
    • Corn Microbiome
    • Genomic Encyclopedia of Bacteria and Archaea (GEBA)
  • Publications
    • Publications Table
    • Publications by Topic
      • Publications: Animal-Microbe Interactions
      • Publications: Phylogenomic and Computational Methods and Tools
      • Publications – Marine Symbioses and Microbiology
      • Publications – Phylogenetic Diversity of Genomes
      • Publications: Plants and Associated Microbes
    • Eisen Pubs on Google Scholar
    • Publications – Pubmed
    • Publications List w/ notes
    • Evolution Textbook
  • Social Media
    • Eisen Lab Blog
    • Eisen’s Tree of Life Blog
    • microBEnet Blog
    • Eisen’s Twitter
    • Eisen Lab on Twitter
  • Education/Outreach
    • Space Microbes
    • Eisen Lab in the News
    • Gut Check: The Microbiome Game
    • Bodega Applied Phylogenetics Course
    • UC Davis Courses
    • Undergrad Genome Project
    • Eisen Talks and Presentations
    • Jonathan Eisen’s TED Talk on “Meet Your Microbes”
    • Jonathan Eisen Talks on Youtube
    • Eisen talks on Slideshare
  • Products
    • Software
      • A5 Assembly Pipeline
      • AMPHORA
      • APIS
      • Biotorrents
      • ComboDB
      • CompostBin
      • Mauve Assembly Metrics
      • PhyloSift
      • phylOTU
      • Pique
      • STAP
      • OTU Hunter
      • WATERS
      • Zorro
    • Lab Data
      • Lab Sequence Data
      • Eisen Lab Data at Figshare
      • Sifting Families: SFams
      • Darwin’s Finch Genome Data at Figshare
      • Data from Morgan et al. metagenomic simulation
      • Haloarchaea Data from Lynch et al. 2012
      • Data from Wu et al. 2011 Stalking 4th Domain paper
    • Other
      • 16S PCR Protocol
      • Gut Check: The Microbiome Game
      • Jonathan Eisen’s Figshare
  • Misc.
    • Retroblogging Meetings and Seminars: Posting Scans of Notes
    • Miscellaneous Notes and Scans
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