NSF Cyber-Enabled Discovery and Innovation declares success, terminates self

Just got this email.  On the one hand it is nice to see that NSF is not keeping around programs when they may no longer be needed.  On the other hand, this somehow seemed melancholy …

Dear Colleague,

The Cyber-Enabled Discovery and Innovation program has demonstrated the value of interdisciplinary computational and data-enabled science and engineering.  Increasingly, this research approach is being integrated into new and continuing NSF programs and solicitations.  As of fiscal year 2012, proposals will no longer be accepted by the CDI program.

Investigators are referred to related NSF funding opportunities, which are listed on this web page (http://www.nsf.gov/cdi).  Please check for updates on this page as new opportunities are announced, and follow the links for program information and program officer contacts.

This is a one-time e-mail being sent to all PIs and Co-PIs of CDI proposals.

Tom Russell, Eduardo Misawa, and Ken Whang
CDI Co-chairs

Me, as a Neanderthal

Went to the Smithsonian Museum of Natural History.  Did something there.  And got this email regarding it with a picture attached.  Explanation is below.  Though I think I probably should have taken off my glasses …

Dear Visitor,

Congratulations! You have been transformed into a Homo neanderthalensis, one of the closest relatives of modern humans. Your picture is attached.

As a Homo neanderthalensis, you live between 200,000 and 28,000 years ago in what is now Europe and Asia. You have a very big nose, which helps you survive in cold climates by warming and humidifying cold, dry air. You bury your dead, use simple symbols, and may even speak a language.

Thanks for visiting the David H. Koch Hall of Human Origins at the Smithsonian National Museum of Natural History.

About the exhibit: The David H. Koch Hall of Human Origins offers visitors an immersive, interactive journey through the origins of human beings and the dramatic stories of survival and extinction in the midst of earth’s history of climate change. Learn more at: http://humanorigins.si.edu/

Buy cool stuff: Shop on-line and discover What Does It Mean to be Human? Check back often for more exciting products. http://tinyurl.com/smithsonianstore

Support us! Your contribution will help us meet the challenge of making the latest discoveries in human origins available for all to see. https://support.si.edu/site/Donation2?idb=914659333&df_id=3064&3064.donation=form1

Fact Sheet from #UCDavis Administration annotated by some skeptical faculty #OccupyUCDavis

Just got a pointer to this by email and thought some would be interested (not endorsing everything that is there but it is definitely worth a look – the Fact Sheet they are annotating rubbed me the wrong way too).

5 UCD faculty members prepared an annotated version of the “fact sheet” sent by the Chancellor’s office last week: https://sites.google.com/site/realfactsheet/realfactsheet.pdf

This is designed not only to give more of the relevant facts, but also to analyze the quality of communications coming out of the Chancellor’s office. The list of endorsers is at https://sites.google.com/site/realfactsheet/endorsers.pdf

Kids book of interest: Antarctic Adventure

Just found out about this new kids book about Antarctica: Antarctic Adventure. Hat tip to Jeff Hoffman, a friend who has been on many many scientific field adventures.
From the book web site:

Antarctic Adventure is the story of author/scientist Mak Saito’s research expedition to the Southern Continent. The book is targeted at children age 3 – 7. Simple text and stunning photographs highlight the adventure elements of fieldwork in the Antarctic (helicopters, snow storms, wildlife). Children learn where Antarctica is, what algae are, what glaciers look like, and the names of several different whales and penguins. More generally, they get a sense of what it means to do scientific fieldwork. A “Dear Reader” section at the end of the book goes into more detail about the expedition’s research goals, which involve the importance of algae in global biogeochemical cycles.

I have just bought a copy … will let people know more when I get it but I am guessing it is going to be good …

Meeting of Faculty in College of Biological Sciences w/ Chancellor Katehi #UCDavis

A few days ago I got the following email:

Good Afternoon,

To all “Faculty Members Only” of the College of Biological Sciences:

Chancellor Katehi has requested a meeting with the faculty members of the College of Biological Sciences.  For this particular session, the invitation is extended to faculty members only.

This will be an opportunity to ask questions and to hear the Chancellors plans for moving forward.

Date:                     Thursday, December 8, 2011
Location:              Conference Room – Life Sciences Building / 1022
Time:                     1:00 pm – 2:30 pm

And today was the day.  It was a very hectic day for me.  AM kid related duties.  Then I dropped off two pairs of broken glasses to get soldered (one of which had broken on the day of the major post-pepper spray rally at UC Davis.  Then off to lab where I had only a short period of free time before lab meeting (alas, unlike last week, this meeting was indoors).  And then off to the meeting with the Chancellor.  Here are some notes from that meeting — more of a stream of consciousness than detailed notes in many cases but hopefully this will give a gist of how the meeting went.

I got to LS1022 a few minutes early, and chatted with a few of the faculty from the College of Biological Sciences who were milling around.  Then the Dean showed up and we all waited for the Chancellor.  We were told she was running a few minutes late and the room started to fill up.  And then she arrived with her chief of staff Karl Engelbach.

And then she gave a very brief mini introduction – said she was here to listen to faculty concerns – explained why she was late – said she had learned a great deal in the last few weeks and truly seemed a bit humbled by the whole thing.  That lasted just a few minutes and then the next 1.5 hours was spent on faculty asking questions or making comments and Katehi responding.  It seemed inappropriate to live tweet the meeting … so I am going to have to go on my notes and my brain to try and convey what happened.

The first question / comment was about students.  One faculty member said that the students really seemed to have two main complaints – increases in tuition and fees and decreases in quality of education.  This person said they agreed with the concerns of the students and wanted to know in particular what Katehi planned to do in terms of quality of education.  Katehi then responded with some comments/ideas including (1) that the state has major money issues that will be here for some time and that the same issues are seen everywhere in the world – the economy is hurting everything (2) that the current plan for how to deal with the squeezing economy is not working – and that she agreed that something new needs to be done – she made an important point – that the world is changing a lot faster than the university is and that at full UC Davis speed we cannot likely match the changes that occur in the world around us (3) that students just cannot be asked to pay more anymore.  Throughout the discussion of these points the Chancellor seemed to be really trying to interact and get a feel for what the faculty thought about these issues (at least to me).

The next question/comment was a critique regarding past changes made by Katehi/the administration which the questioner said we too much “in the box” – as in – too much business as usual.  Interestingly (to me) this comment related to the centralization of administrative functions which the questioner clearly did not like and this person suggested that actually decentralization might be better and more cost effective.  That is – having the administrative functions closer to the users (i.e, the departments and the faculty).  I am not sure I bought this point – I mean – yes – having more direct contacts with grants and accounting and HR and legal and such people could be useful but I think I agree with the Chancellor on this in that there was enormous redundancy and some of this could be eliminated to save money.

The next question was about the quality of education at UC Davis and the questioner expressed concern that students are getting less quality as class sizes are going up and TAs are being cut and lecturers are being cut.  And the concern was expressed that this will damage UC Davis in many ways including that students will not have as positive an experience and that this in turn might affect long term interactions with alumni.  In addition the suggestion was made that students never remember the large classes fondly and that the key to positive alumni interactions is small classes.  I definitely did not buy this point – I think certainly eliminated TAs and lecturers is not a good idea but I also feel that large classes can be taught well or poorly and that it is not as simple as saying we just need smaller classes.  When I was at Harvard as an undergrad my favorite classes including small ones (e.g., Creative Writing, Conservation Biology tutorial) as well as big ones (e.g., Stephen Jay Gould’s History of Earth and of Life class).  I think class size is less important than instructor passion …

But Katehi certainly seemed open to the notion that quality of instruction was critical.  And then she recounted a story about her daughter (but first apologized if anyone had heard the story before) having a wonderful experience with education at a very large school (U. Indiana).  The key to the story was a TA who wrote to Katehi and her husband to nudge them to encouraging their daughter to switch from studying business to studying English.

Other people chimed in on this issue and expressed concern about the possible plan for UC Davis to add more students in the future.  They said that we should figure out how to improve the quality of education before increasing the number of students on campus.

Alas – I am going to have to summarize some of the other points without providing too much detail as I have to get my kids to sleep soon so here are some other points raised:

1. Many suggested that the Chancellor needs to reduce her separation from the people of the University and to not be locked off with administrators all the time.  The wording one person used was “we should deprofessionalize the administration”.  That is, too many administrators who were removed from the daily lives of the constituents – the faculty, staff and students.  There were many comments about having the Chancellor and hopefully others in the administration spend more time outside of the Administration building (Mrak Hall) and more time with students, staff and faculty. Katehi agreed with the need for this.

2. Multiple people expressed concern with the Chancellors new “Advisory Board”, in particular the corporate members as well as one ex-UCD administrator (I note – I critiqued this group as soon as someone pointed it out to me).  Katehi accepted the critiques and said that the Board was announced before it was completed and that also it was really supposed to be a UC Davis advocacy group – to fight for UC Davis – and not an advisory group to her per se.  Katehi noted that people were selected for this group in part if they were UC Davis Alumni.  And some in our meeting supported her appointment of such Alums.  But others expressed frustration that this group was just unseemly.  I pointed out that the naming of this group was yet another sign of poor communication and a lack of rapid/nimble responses to critiques.

3. There were many concerns expressed with top down decision making that did not include discussions with the faculty.

4. Katehi suggested that there was enormous pressure from outside UC Davis for growth (e.g., to take more students) and for certain types of changes.

5. Katehi said that the UC Davis budget still needs to be completely reworked and that what we have is a “legacy” system which does not work and is very opaque (even to her).  She noted that in the past everyone on campus – every group – has expressed concern to her that they believe that their group subsidizes everyone else on campus.  That is – everyone thinks they are getting the shaft and that they deserve more financial support than other groups.  (I note – this could be because the central UC offices or the UCD administration takes too much of the money and thus everyone is right – everyone may be getting the shaft).

6. Katehi, in response to a question, said she believed they had done a decent job of reducing the size and cost of the administration but that it was very difficult to move fast in such things.

7. There was a very strange question about pepper spray dosage – Katehi wisely did not answer and after a moment of hushed silence she said “I do not know what to say to that” or something like that

8.  There was a question/statement about “salary recovery” for faculty.  Apparently, there has been some reduction in the College budget where one of the possible (or even the only) solution presented to some faculty has been that they will have to recover more of their salary than they currently do (I think most recover summer salary or some equivalent).  I am not sure what the issue is here as I have not heard any discussion of this.  But clearly people were very upset by this issue – pressure to recover more salary without apparently alleviation of some teaching.  Katehi seemed to not know what had been told to faculty and my guess is that this was a College of Biological Sciences level issue and perhaps she had no direct way of knowing about it.  And I note – I am not sure what the complaint here was – I personally recover more of my salary than I have to via grants and I have never complained about it since I would like to free up funds to be used for other purposes.  But perhaps I am understanding the issues here.

9. There was a concern expressed with a claim that the University Counsel got in the way of many initiatives and also seemed to insulate Katehi and others from the campus.  Apparently, the University Counsel reports to the UC Office of the President and not to Katehi.  Such a structure, if true, seems like it might introduce a lot of complications.  Whatever the structure, clearly some of the faculty in the college are not happy with interactions with the University counsel.

10. One concern I did not expect related to UC Davis joining the NCAA Division I in sports a few years back.  One person raised this as an issue and said that much money could probably have been saved by never doing that.  It was suggested that Davis could give up it’s move to Division I.  Katehi, who was not involved in the move to Division I, said that turning back the clock on this would be hard – much money had already been spent on the changes and it was possible to stay in Division I and yet retain some of the old flavor of UC Davis where sports was less about a few big programs and more about broad participation.

11. A final, somewhat funny, concern was that for the construction going on on campus, someone suggested that they may want to remove the total amount of $$ being spent on projects from the signs at the project sites.  A few million here to there on those projects may make students feel like they are really getting screwed when asked to pay more.  Someone else later also noted that one could simply put all such projects on hold and take the $$$ from them an apply it to teaching and students.   Katehi said that was not possible for many projects since the money came from sources in many cases that stipulated that it could only be used for those construction projects.

That’s about all I can recall.  I note – I think Katehi handled the discussion very well overall.  She seemed truly interested in hearing what people had to say and in changing the tone and pattern of the UC Davis administration as well as in really turning the pepper spray incident into a catalyst for improving the lives of students on campus.  As many know – I personally did not make any calls for Katehi to resign but I also have not signed any letter of endorsement as some faculty have.  I am more and more confident that Katehi will really try to do a better job with many issues in the future in response to this incident and since overall I thought she was doing a good job as chancellor before I am hopeful for the future of UC Davis.  I still am reserving judgement about whether or not real changes occur.

Twisted Tree of Life Award #12: Billion Year Old Smart Bacteria That Perfectly Treat Cancer

OMG – for crying out loud. In the following story Billion-year-old Bacteria Could be Medical Goldmine Fox News discusses studies of marine cyanobacteria at the University of Florida. It is so wrong in so many ways I do not know where to begin. Watch the video first for layers of trouble. Then, if you dare, read the article. Among the painful parts:
All cyanobacteria are basically lumped together into a single entity
Cyanobacteria are the oldest organisms on earth – billions of years old – which means they must have have evolved amazing chemistry to deter predators. Wow – by the same logic – bacteria in general should be even better – because bacteria are even older than cyanobacteria. And therefore – if one focused on ALL bacteria, we should find even better predator deterring chemicals. Wait – actually – why not target all life. Surely, if cyanobacteria have perfected the art of deterring predators by the fact that they are billions of years old surely the existence of life is proof that there must be some protection against predators and therefore “living organisms” have the best deterrence systems.
Then they make the leap from cyanobacteria surviving for billions of years by deterring predators to – wait for it – wait – hold on – be patient – wait for it – to – yes that is right – deterring “a devastating human predator – cancer.” At least they did not reveal that cancer is also billions of years old.
And then, without any further detail, they leap from this insight to that apparently the researchers have found that the cyanobacteria make the nearly perfect anticancer drug that “has a 1-2 punch” to inhibit growth factors and receptors to be extremely potent.
Furthermore they tell us that these cyanobacteria “are valuable because unlike similar species they are smart – targeting bad cells and sparing healthy ones.” That is right, the cyanobacteria have been smart enough to target their drugs to human cancer cells – something they must encounter frequently in their marine life.
Oh for f3#*$# sake. I can’t even write about this anymore.
I will just give out a well deserved “Twisted Tree of Life” award here. Not sure though who should get it – because it is unclear if this material came from U. Florida or if the station somehow came to it itself.

Past winners include

    Some new links/information regarding Pepper Spray incident and #UCDavis response

    Not going to write much here but am posting some links for those interested:

    More Davis Enterprise Stories

    Other Stories

    My recent posts:

    Kroll Associates "fact finding" email re: #OccupyUCDavis #UCDavis

    Just got this email and thought I should post it

    from UC Davis Fact Finding Review ucdavisfactfindingreview@ucdavis.edu to UC Davis Campus Community date Wed, Dec 7, 2011 at 4:37 PM subject UC Davis Fact-Finding Review: November 18 Pepper-Spray Incident mailed-by ucdavis.edu

    To the UC Davis Campus Community:

     We have been asked to contact you on behalf of Kroll Associates, which has been retained by University of California President Mark Yudof to conduct an independent fact-finding review concerning the pepper-spraying incident that occurred on the UC Davis Quad on November 18. The fact-finding report will be provided to a task force appointed by President Yudof. The task force is comprised of 12 students, faculty, alumni and staff members, and chaired by former California Supreme Court Justice Cruz Reynoso, a professor emeritus at the UC Davis School of Law. The task force is charged with reviewing the fact-finding report and other available information to assess what happened on November 18, assign responsibility, and “make recommendations regarding improvements to police procedures, command protocols and campus policies and oversight structures that will help ensure that the rights and safety of nonviolent protestors and the entire campus community are protected.”

    Kroll investigators have advised that they wish to provide the task force a factual, fair and objective report as to what occurred on November 18. To this end, the Kroll investigators wish to speak with witnesses to the events on November 18 to learn their perspectives on this incident. If you have information concerning this incident, the Kroll investigators would like to have an opportunity to interview you. You may contact the Kroll team of Jim Voge and Greg McKnight as follows: telephone number (530) XXX-XXXX, or email address: ucdreport@yahoo.com. You may also visit their temporary offices located on the second floor of the Buehler Alumni and Visitors Center.

    Have a bite while talking about bits & bytes #UCDavis

    Just found out about this …

    Bits & Bites lunch club at UC Davis

    “Bits & bites is a new lunch club that aims to meet once a week at UC Davis and talk about various aspects of sequence analysis. The idea is to gather together people in a very informal environment and share expertise on various subjects relating to bioinformatics and genomics.”

    More detail from the site:
    The plan will be to meet on Thursdays between 12:00 and 1:00 at various venues on the UC Campus, possibly including the Genome Center, and Life Sciences Addition – as well as possible forays into Davis. Occasionally – maybe once a month – we would try to host an invited speaker to give deeper insights into a specific topic.
    To find out more details please join the bits & bites mailing list (a low traffic list which will mostly be used to announce the venue and discussion topics each week).
    Sounds good to me.

    His fees are hella high – perspective from a #UCDavis student #OccupyUCDavis

    Perspective from a UC Davis student