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Jonathan Eisen's Lab
All microbes, all the time. May the microbes be ever in your favor.
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Jonathan Eisen Bio
Funding
Questions for Jonathan Eisen (Advice, Background, Projects, etc)
Eisen CV (Google Doc)
More About Jonathan Eisen
People
Projects
microBEnet
Istmobiome
Seagrass Microbiomes
SWAN (Studies of Women’s Health Across the Nation) Microbiome
Corn Microbiome
Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Past Projects
Publications
Eisen Pubs on Google Scholar
Publication List Google Doc
Eisen Pubs on Pubmed
Publications List w/ notes
Evolution Textbook
Social Media
Eisen Lab Blog
Eisen’s Tree of Life Blog
microBEnet Blog
Eisen’s Twitter
Eisen Lab on Twitter
Education/Outreach
Space Microbes
Eisen Lab in the News
Gut Check: The Microbiome Game
Bodega Applied Phylogenetics Course
UC Davis Courses
Undergrad Genome Project
Eisen Talks and Presentations
Jonathan Eisen’s TED Talk on “Meet Your Microbes”
Jonathan Eisen Talks on Youtube
Eisen talks on Slideshare
Products
Software
A5 Assembly Pipeline
AMPHORA
APIS
Biotorrents
ComboDB
CompostBin
Mauve Assembly Metrics
PhyloSift
phylOTU
Pique
STAP
OTU Hunter
WATERS
Zorro
Lab Data
Lab Sequence Data
Eisen Lab Data at Figshare
Sifting Families: SFams
Darwin’s Finch Genome Data at Figshare
Data from Morgan et al. metagenomic simulation
Haloarchaea Data from Lynch et al. 2012
Data from Wu et al. 2011 Stalking 4th Domain paper
Other
16S PCR Protocol
Gut Check: The Microbiome Game
Jonathan Eisen’s Figshare
Misc.
Retroblogging Meetings and Seminars: Posting Scans of Notes
Miscellaneous Notes and Scans
Tag:
iNaturalist
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