AAAS and SnapChat collaborate to develop SnapScience to publish scientific papers transiently

Just got this in an email and thought it should be shared.

Washington, DC. August 15, 2014.

Kent Anderson, the newly appointed Publisher of AAAS (see http://www.aaas.org/news/aaas-names-new-science-publisher) has announced his first action as Publisher – a partnership between AAAS and Snapchat (https://www.snapchat.com).

Anderson said “Although I will not officially assume the role of Science publisher until 3 November, this was too important a task to not carry out immediately. AAAS has always been looking for new ways to reduce the public availability of scientific publications. AAAS approached Snapchat a few months ago and in secret developed a new App “SnapScience” which allows the transient publication of scientific articles. Article longevity can be set to 1 minute, 5 minutes or 15 minutes.”

Anderson followed this with “This kind of thing I had always hoped to do in my role as president of the Society for Scholarly Publishing but the technology was just not available. Snapchat has developed the perfect platform for the future of AAAS and scholarly publishing in general with its ability to allow readers a glimpse of a scientific article but not allow them to keep it or reread it or redisplay it.”

AAAS CEO Phil Lesher said “We have had serious issues recently with the public demanding access to articles in Science and other AAAS published journals. And in addition, we have published a slew of papers that have needed to be retracted shortly after publication. This solves both issues. First, all papers will only be transiently available, so their there is no need for retractions. Second, even scientists will only have short term access to papers so the public cannot possibly demand access for themselves.”

Anderson also said “We think SnapScience is the perfect way for me to step into my new role as Publisher of the Science family of journals. It is cutting edge. It is exactly the type of thing that publishers have been looking for. And it will be fun.”

AAAS hopes to roll out updates to SnapScience that will allow researchers to also publish data and protocols only transiently as well.

Today’s YAMMM (Yet Another Mostly Male Meeting) Brought to You by CIFAR & NAS

Well, just got an invite to this meeting: Symbioses becoming permanent: The origins and evolutionary trajectories of organelles.  The topic seems of direct interest to what I work on.  And, it is relatively close (Irvine is a short hop away).  So this could be a way to go to a meeting without having to travel too far.  And maybe I could see my younger brother Matt who lives in LA and just graduated from UC Irvine’s Masters program in Sound Engineering. Then I looked at the schedule of speakers and organizers.  Many are friends.  Many others are colleagues.  Could be fun to see some people I have not seen in a while.  And then I realized, most – no nearly all of them – are men.  Below I list the people involved in the meeting, highlighting men in yellow and women in blue.

Organizers: W. Ford Doolittle, Patrick Keeling, and John McCutcheon

Distinctive Voices Public Lecture presented by Michael Gray, CIFAR Advisor, Dalhousie University

Session 1: Genomes (evolutionary rates, oddities, and reduction)

  • Introduction and welcome remarks – W. Ford Doolittle, CIFAR Advisor & Patrick Keeling, CIFAR Program Director and Senior Fellow
  • John McCutcheon, CIFAR Associate Fellow, University of Montana
  • John Archibald, CIFAR Senior Fellow, Dalhousie University, Nuclear organelles 
  • Andrew Roger, CIFAR Senior Fellow, Dalhousie University, Organelle reduction 
  • Siv Andersson, Uppsala University, Alphaproteobacterial genome evolution 
  • David Smith, University of Western Ontario, Roots of genomic architecture variation 
  • Daniel Sloan, Colorado State University, Cytonuclear co-evolution under extreme mitochondrial mutation rates
  • John Allen, University College London, Why keep genomes?

Session 2: Integration/Control (trafficking, signaling, transporters)

  • Debash Bhattacharya, Rutgers University, Transporters in organellogenesis 
  • Nancy Moran, University of Texas, Austin, Insect endosymbionts 
  • Geoff McFadden, University of Melbourne, Diversity of protein trafficking
  • Chris Howe, Cambridge University, Why integrate?
  • Steve Perlman, CIFAR Fellow, University of Victoria, Maternal transmission, sex ratio distortion, and mitochondria 
  • William Martin, Düsseldorf University, Endosymbiont and organelle, what’s the difference? 
  • Moriya Okhuma, Riken University, Metabolic integration across endosymbiotic communities

Session 3: Theories and Models

  • Eors Szathmary, Loránd University, A fresh look at cooperation in some major transitions, especially the origin of eukaryotes
  • Marc Ereshefsky, University of Calgary, Evolutionary individuality
  • Peter Godfrey-Smith, City University of New York, Individuality and the egalitarian transitions 
  • Maureen O’Malley, University of Sydney, Philosophical Reflections on Endosymbiosis: Implications for Evolutionary Theory
  • Toby Kiers, University Amsterdam, Bacterial cooperativity

Closing remarks J. McCutcheon


So – that appears to be a ratio of 18 male speakers and 4 female speakers for a whopping 18% female speakers.  No thanks CIFAR and NAS.  I will sign up for a different meeting.  And by the way – WTF?  There are so so many qualified women working on these topics – what let to this 18:4 ratio?  The organizers should really rethink their processes and the sponsors should pull funding from meetings like this.  It is the only way some people will pay attention to diversity.


UPDATE: 8/20

Wrote to the NAS via their Website

To whom it may concern:

I am writing to express my disappointment in the gender ratio of speakers at this meeting (18 males, 4 females).  Due to the skew I am unwilling to participate.  See http://phylogenomics.blogspot.com/2014/08/todays-yammm-yet-another-mostly-male.html for details.

Sincerely,

Jonathan Eisen

Got this response

Dear Dr. Eisen,

The NAS Committee on Scientific Programs, which oversees the Sackler Colloquia most definitely considers gender diversity when approving these programs.  When organizers propose the programs they achieve a good balance on paper. Regrettably, in many fields, women scientists are at a premium and are sometimes overwhelmed with invitations and demands for their participation on programs and committees.  For a variety of reasons, including availability of speakers, the final program is not always as optimally balanced as originally intended.

I have conveyed your message to NAS Vice President and Chair of the Committee on Scientific Programs and will also share your concerns with the colloquium organizers and co-sponsor.

Best regards,

Susan Marty
Program Director
National Academy of Sciences
Sackler Colloquia
http://www.nasonline.org/programs/sackler-colloquia/

So I wrote back

Susan 

Thank you very much for the response.  It is good to hear there is some emphasis on gender diversity when programs and developed.  However, in my experience and based on my readings of the literature on this topic, this is not usually sufficient to produce diverse conferences.  Do you know if the NAS has any additional policies relating to diversity at conferences.  For example, if someone does not accept an invitation, is the organizer of the meeting then free to select whomever they like or are there protocols to help guarantee that the selection of replacements is also diverse?  Also do you know if there are any policies relating to the meetings themselves such as child care that have been shown to impact the attendance of women more than men?   

Any additional information you have would be appreciated.  I think that NAS could and should do more than just review the proposed list of invitees. 

Sincerely
Jonathan Eisen 

If I were applying for post-docs now, I would consider this one w/ Bassler, Stone and Wingreen

Just got this email:

Dear Jonathan,

We are looking for adventurous postdocs to work on bacterial quorum
sensing and biofilms. Our labs combine genetics, biochemistry,
structure, engineering, microfluidics, chemical, computational, and
theoretical approaches. Postdocs that join the group are welcomed into
a nurturing, collaborative, and vibrant atmosphere in which they can
tackle fundamental questions regarding the principles underlying
collective behaviors. They will learn and exploit strategies from a
variety of scientific disciplines. The interdisciplinary training they
receive with us will provide an excellent foundation for a successful
independent career.

Please send this note to your terrific senior graduate students and
encourage them to apply to us. We have attached information on the
position and how to apply.

Yours,

Bonnie Bassler, Howard Stone, and Ned Wingreen
———————

 

Postdoc ad Molecular Biology Princeton req#1400519.pdf

An important read: Emma Pierson on gender and authorship position in science

This is a fascinating read: In Science, It Matters That Women Come Last | FiveThirtyEight.  By Emma Pierson, who works at 23 and me.  It has all sorts of references of use and details on authorship position in scientific publications and how gender and author position are correlated.  Definitely worth a read.

A.P. Giannini Foundation 2015 Postdoctoral Research Fellowship Program

Posting this that I recevied via email:

Dear Dr. Eisen:

The A.P. Giannini Foundation invites physician-scientists and junior researchers with 6-36 months of postdoctoral research experience to apply to the 2015 Postdoctoral Research Fellowship Program. The Fellowship Program supports innovative research in the basic sciences and applied fields and trains fellows to become established
investigators. The research should advance the translation of biomedical science into treatments, preventions and cures for human diseases.

Since 1951, the A.P. Giannini Foundation has awarded over 750 fellowships to postdoctoral biomedical researchers sponsored by California’s eight accredited medical schools. The Foundation awards new fellowships each year on a competitive, peer-review basis and will fund the fellowship for a maximum of three years based on satisfactory performance.

ELIGIBILITY AND QUALIFICATIONS

§ Candidates are eligible to apply if they have conducted
postdoctoral research for no less than 6 months and no greater than 36 months in the laboratory of their sponsor/mentor at the time of this year’s application deadline, November 3, 2014. The starting date of postdoctoral studies should be well documented and easily verifiable. Applicants with tenure-track research positions or faculty
appointments will not be considered.

§ Candidates must be United States citizens or permanent alien residents. They need to hold or complete an MD; MD/PhD; PhD or equivalent degree before they activate the fellowship.

§ Candidates must perform their research training under the sponsorship of an accredited California medical school and the mentorship of a principal investigator at the sponsoring medical school. They must arrange for their training before applying to the 2015 Fellowship Program. The mentor may supervise a maximum of two A.P. Giannini Foundation fellows in any one year.

FELLOWSHIP STIPENDS

The current fellowship stipend is $46,000 in Year 1, $48,000 in Year 2 and $50,000 in Year 3. Stipend payments are sent directly to the sponsoring medical school and can be used only for salary support of the fellow. No deductions are allowed for benefits, departmental or institutional overhead. The Foundation will announce the 2015 fellowship stipends by December 15, 2014.

Candidates may be eligible to receive additional salary support from their sponsoring institution but cannot hold another full fellowship or a federally funded career development award. Other income will not preclude favorable consideration; however, candidates must state the source and amount of other income they expect to receive in their application.

APPLICATION PROCEDURES

Candidates must use the 2015 Application Form to apply to the 2015 Postdoctoral Research Fellowship Program. The 2015 application form is available at http://www.apgianninifoundation.org. Completed applications for the 2015 Fellowship Program are due no later than Monday, November 3, 2014.

Job ad: Director of Charles Darwin research Station in Galapagos

Well, this could be an interesting job .. (below is an email I just got forwarded).

FROM CDF

We are seeking a new Science Coordinator to oversee and coordinate the scientific program of Charles Darwin Research Station (CDRS), and to direct other CDRS functions.

Please find attached the Terms of Reference. The application deadline is September 15th.

This is an exciting opportunity to play a key role in the biggest and oldest scientific institution on the Galapagos Islands.

The applicants can find more information about the Charles Darwin Foundation http://www.darwinfoundation.org in our website.

It would be appreciated if you shared this with your colleagues.
Science-Coordinator-CDF 2014.pdf

Who are the contaminants in your sequencing project? (crosspost from #microBEnet)

This was originally posted on microBEnet: Who are the contaminants in your sequencing project?

Well, been having many discussions recently about PCR amplification happening from “negative” controls where no sample DNA was added. Such amplification is alas pretty common – due to contamination occurring in some other material added to the PCR reaction.  Obviously it would be best to eliminate all DNA contamination of all reagents and all PCRs.  But if that does not happen, it is possible to try to detect contamination after it has happened.  Below I post some papers related to post-sequencing detection of contamination:

Any other suggestions or comments would be welcome. UPDATE 10:30 AM 7/25 – Was reminded on Twitter of a new, critically relevant publication on this issue: Reagent contamination can critically impact sequence-based microbiome analyses

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Bat tour at Yolo Basin Wetlands

Did our second evening bat tour at the local Yolo Basin Wetlands last night.  It was very nice.  They start off with a lecture and bat introduction at the Visitor Center and then a convoy heading out to the wetlands and drove way way into the back (the side near Sacramento) to just next to the causeway.  Then we waited until sunset and out came the bats.  Thousands and thousands of them.  It was cool.  Here are some videos and pics.  And also some responses to my Tweets about it.

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At #At #UCDavis 7/28: Rachel Dutton “Cheese Rinds as Model Microbial Communities” cc: @racheljdutton

Rachel Dutton

Harvard University

“Cheese rinds as model microbial communities”

July 28, 2014 12:00 PM

Sensory Theater RMI
UC Davis
Dutton.Flier.pdf

How do journals like this even exist? Lovely spam! Wonderful spam!

Just got this email.  I consider this almost unquestionable proof that this is a spam open access journal (e.g., I don’t do any work in this field ..)

Dear Dr. Jonathan A. Eisen,

Greetings from the Journal of Immunology and Immunotherapeutics!!!

At the outset, it’s your eminence & reputation in the quality of research field for which you have been invited to become Editorial Board member for our Journal.  We are aware of your reputation for quality of research and trustworthiness in the field of “Immunology and Immunotherapeutics” and that is why you are being requested to be an Editorial Board Member of our journal entitled “Journal of Immunology and Immunotherapeutics”.

 Please go through the URL for Journal home page: http://imprintsonline.org/journal-of-immunology-and-immunotherapeutics/

IMPRINTS Online Publishing uses online review and editorial tracking systems of Editorial Manager® / IMPRINTS Group for quality review process. All works published by IMPRINTS Publishing Group are under the terms of the Creative Commons Attribution License. This permits anyone to copy, distribute, transmit and adapt the work provided the original work and source is appropriately cited. IMPRINTS Publishing Group supports the Bethesda statement on Open Access publishing.

We may again assure you of international quality and standards of our articles published in our journals, using state-of-the-art prominent reviewers and editorial board. We also assure you of our best co-operation always.

If you are interested, you are requested to send a recent passport size photo (to display at our website) and your C.V, Biography (150 words), Research Interests for our records.

We look forward to a close and lasting scientific relationship for the benefit of scientific community.

With best regards,

Stephen H
Managing Editor

Immunology and Immunotherapeutics