Today’s YAMMM (Yet Another Mostly Male Meeting) Brought to You by CIFAR & NAS

Well, just got an invite to this meeting: Symbioses becoming permanent: The origins and evolutionary trajectories of organelles.  The topic seems of direct interest to what I work on.  And, it is relatively close (Irvine is a short hop away).  So this could be a way to go to a meeting without having to travel too far.  And maybe I could see my younger brother Matt who lives in LA and just graduated from UC Irvine’s Masters program in Sound Engineering. Then I looked at the schedule of speakers and organizers.  Many are friends.  Many others are colleagues.  Could be fun to see some people I have not seen in a while.  And then I realized, most – no nearly all of them – are men.  Below I list the people involved in the meeting, highlighting men in yellow and women in blue.

Organizers: W. Ford Doolittle, Patrick Keeling, and John McCutcheon

Distinctive Voices Public Lecture presented by Michael Gray, CIFAR Advisor, Dalhousie University

Session 1: Genomes (evolutionary rates, oddities, and reduction)

  • Introduction and welcome remarks – W. Ford Doolittle, CIFAR Advisor & Patrick Keeling, CIFAR Program Director and Senior Fellow
  • John McCutcheon, CIFAR Associate Fellow, University of Montana
  • John Archibald, CIFAR Senior Fellow, Dalhousie University, Nuclear organelles 
  • Andrew Roger, CIFAR Senior Fellow, Dalhousie University, Organelle reduction 
  • Siv Andersson, Uppsala University, Alphaproteobacterial genome evolution 
  • David Smith, University of Western Ontario, Roots of genomic architecture variation 
  • Daniel Sloan, Colorado State University, Cytonuclear co-evolution under extreme mitochondrial mutation rates
  • John Allen, University College London, Why keep genomes?

Session 2: Integration/Control (trafficking, signaling, transporters)

  • Debash Bhattacharya, Rutgers University, Transporters in organellogenesis 
  • Nancy Moran, University of Texas, Austin, Insect endosymbionts 
  • Geoff McFadden, University of Melbourne, Diversity of protein trafficking
  • Chris Howe, Cambridge University, Why integrate?
  • Steve Perlman, CIFAR Fellow, University of Victoria, Maternal transmission, sex ratio distortion, and mitochondria 
  • William Martin, Düsseldorf University, Endosymbiont and organelle, what’s the difference? 
  • Moriya Okhuma, Riken University, Metabolic integration across endosymbiotic communities

Session 3: Theories and Models

  • Eors Szathmary, Loránd University, A fresh look at cooperation in some major transitions, especially the origin of eukaryotes
  • Marc Ereshefsky, University of Calgary, Evolutionary individuality
  • Peter Godfrey-Smith, City University of New York, Individuality and the egalitarian transitions 
  • Maureen O’Malley, University of Sydney, Philosophical Reflections on Endosymbiosis: Implications for Evolutionary Theory
  • Toby Kiers, University Amsterdam, Bacterial cooperativity

Closing remarks J. McCutcheon


So – that appears to be a ratio of 18 male speakers and 4 female speakers for a whopping 18% female speakers.  No thanks CIFAR and NAS.  I will sign up for a different meeting.  And by the way – WTF?  There are so so many qualified women working on these topics – what let to this 18:4 ratio?  The organizers should really rethink their processes and the sponsors should pull funding from meetings like this.  It is the only way some people will pay attention to diversity.


UPDATE: 8/20

Wrote to the NAS via their Website

To whom it may concern:

I am writing to express my disappointment in the gender ratio of speakers at this meeting (18 males, 4 females).  Due to the skew I am unwilling to participate.  See http://phylogenomics.blogspot.com/2014/08/todays-yammm-yet-another-mostly-male.html for details.

Sincerely,

Jonathan Eisen

Got this response

Dear Dr. Eisen,

The NAS Committee on Scientific Programs, which oversees the Sackler Colloquia most definitely considers gender diversity when approving these programs.  When organizers propose the programs they achieve a good balance on paper. Regrettably, in many fields, women scientists are at a premium and are sometimes overwhelmed with invitations and demands for their participation on programs and committees.  For a variety of reasons, including availability of speakers, the final program is not always as optimally balanced as originally intended.

I have conveyed your message to NAS Vice President and Chair of the Committee on Scientific Programs and will also share your concerns with the colloquium organizers and co-sponsor.

Best regards,

Susan Marty
Program Director
National Academy of Sciences
Sackler Colloquia
http://www.nasonline.org/programs/sackler-colloquia/

So I wrote back

Susan 

Thank you very much for the response.  It is good to hear there is some emphasis on gender diversity when programs and developed.  However, in my experience and based on my readings of the literature on this topic, this is not usually sufficient to produce diverse conferences.  Do you know if the NAS has any additional policies relating to diversity at conferences.  For example, if someone does not accept an invitation, is the organizer of the meeting then free to select whomever they like or are there protocols to help guarantee that the selection of replacements is also diverse?  Also do you know if there are any policies relating to the meetings themselves such as child care that have been shown to impact the attendance of women more than men?   

Any additional information you have would be appreciated.  I think that NAS could and should do more than just review the proposed list of invitees. 

Sincerely
Jonathan Eisen 

If I were applying for post-docs now, I would consider this one w/ Bassler, Stone and Wingreen

Just got this email:

Dear Jonathan,

We are looking for adventurous postdocs to work on bacterial quorum
sensing and biofilms. Our labs combine genetics, biochemistry,
structure, engineering, microfluidics, chemical, computational, and
theoretical approaches. Postdocs that join the group are welcomed into
a nurturing, collaborative, and vibrant atmosphere in which they can
tackle fundamental questions regarding the principles underlying
collective behaviors. They will learn and exploit strategies from a
variety of scientific disciplines. The interdisciplinary training they
receive with us will provide an excellent foundation for a successful
independent career.

Please send this note to your terrific senior graduate students and
encourage them to apply to us. We have attached information on the
position and how to apply.

Yours,

Bonnie Bassler, Howard Stone, and Ned Wingreen
———————

 

Postdoc ad Molecular Biology Princeton req#1400519.pdf

An important read: Emma Pierson on gender and authorship position in science

This is a fascinating read: In Science, It Matters That Women Come Last | FiveThirtyEight.  By Emma Pierson, who works at 23 and me.  It has all sorts of references of use and details on authorship position in scientific publications and how gender and author position are correlated.  Definitely worth a read.

A.P. Giannini Foundation 2015 Postdoctoral Research Fellowship Program

Posting this that I recevied via email:

Dear Dr. Eisen:

The A.P. Giannini Foundation invites physician-scientists and junior researchers with 6-36 months of postdoctoral research experience to apply to the 2015 Postdoctoral Research Fellowship Program. The Fellowship Program supports innovative research in the basic sciences and applied fields and trains fellows to become established
investigators. The research should advance the translation of biomedical science into treatments, preventions and cures for human diseases.

Since 1951, the A.P. Giannini Foundation has awarded over 750 fellowships to postdoctoral biomedical researchers sponsored by California’s eight accredited medical schools. The Foundation awards new fellowships each year on a competitive, peer-review basis and will fund the fellowship for a maximum of three years based on satisfactory performance.

ELIGIBILITY AND QUALIFICATIONS

§ Candidates are eligible to apply if they have conducted
postdoctoral research for no less than 6 months and no greater than 36 months in the laboratory of their sponsor/mentor at the time of this year’s application deadline, November 3, 2014. The starting date of postdoctoral studies should be well documented and easily verifiable. Applicants with tenure-track research positions or faculty
appointments will not be considered.

§ Candidates must be United States citizens or permanent alien residents. They need to hold or complete an MD; MD/PhD; PhD or equivalent degree before they activate the fellowship.

§ Candidates must perform their research training under the sponsorship of an accredited California medical school and the mentorship of a principal investigator at the sponsoring medical school. They must arrange for their training before applying to the 2015 Fellowship Program. The mentor may supervise a maximum of two A.P. Giannini Foundation fellows in any one year.

FELLOWSHIP STIPENDS

The current fellowship stipend is $46,000 in Year 1, $48,000 in Year 2 and $50,000 in Year 3. Stipend payments are sent directly to the sponsoring medical school and can be used only for salary support of the fellow. No deductions are allowed for benefits, departmental or institutional overhead. The Foundation will announce the 2015 fellowship stipends by December 15, 2014.

Candidates may be eligible to receive additional salary support from their sponsoring institution but cannot hold another full fellowship or a federally funded career development award. Other income will not preclude favorable consideration; however, candidates must state the source and amount of other income they expect to receive in their application.

APPLICATION PROCEDURES

Candidates must use the 2015 Application Form to apply to the 2015 Postdoctoral Research Fellowship Program. The 2015 application form is available at http://www.apgianninifoundation.org. Completed applications for the 2015 Fellowship Program are due no later than Monday, November 3, 2014.

Job ad: Director of Charles Darwin research Station in Galapagos

Well, this could be an interesting job .. (below is an email I just got forwarded).

FROM CDF

We are seeking a new Science Coordinator to oversee and coordinate the scientific program of Charles Darwin Research Station (CDRS), and to direct other CDRS functions.

Please find attached the Terms of Reference. The application deadline is September 15th.

This is an exciting opportunity to play a key role in the biggest and oldest scientific institution on the Galapagos Islands.

The applicants can find more information about the Charles Darwin Foundation http://www.darwinfoundation.org in our website.

It would be appreciated if you shared this with your colleagues.
Science-Coordinator-CDF 2014.pdf

Who are the contaminants in your sequencing project? (crosspost from #microBEnet)

This was originally posted on microBEnet: Who are the contaminants in your sequencing project?

Well, been having many discussions recently about PCR amplification happening from “negative” controls where no sample DNA was added. Such amplification is alas pretty common – due to contamination occurring in some other material added to the PCR reaction.  Obviously it would be best to eliminate all DNA contamination of all reagents and all PCRs.  But if that does not happen, it is possible to try to detect contamination after it has happened.  Below I post some papers related to post-sequencing detection of contamination:

Any other suggestions or comments would be welcome. UPDATE 10:30 AM 7/25 – Was reminded on Twitter of a new, critically relevant publication on this issue: Reagent contamination can critically impact sequence-based microbiome analyses

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Bat tour at Yolo Basin Wetlands

Did our second evening bat tour at the local Yolo Basin Wetlands last night.  It was very nice.  They start off with a lecture and bat introduction at the Visitor Center and then a convoy heading out to the wetlands and drove way way into the back (the side near Sacramento) to just next to the causeway.  Then we waited until sunset and out came the bats.  Thousands and thousands of them.  It was cool.  Here are some videos and pics.  And also some responses to my Tweets about it.

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At #At #UCDavis 7/28: Rachel Dutton “Cheese Rinds as Model Microbial Communities” cc: @racheljdutton

Rachel Dutton

Harvard University

“Cheese rinds as model microbial communities”

July 28, 2014 12:00 PM

Sensory Theater RMI
UC Davis
Dutton.Flier.pdf

How do journals like this even exist? Lovely spam! Wonderful spam!

Just got this email.  I consider this almost unquestionable proof that this is a spam open access journal (e.g., I don’t do any work in this field ..)

Dear Dr. Jonathan A. Eisen,

Greetings from the Journal of Immunology and Immunotherapeutics!!!

At the outset, it’s your eminence & reputation in the quality of research field for which you have been invited to become Editorial Board member for our Journal.  We are aware of your reputation for quality of research and trustworthiness in the field of “Immunology and Immunotherapeutics” and that is why you are being requested to be an Editorial Board Member of our journal entitled “Journal of Immunology and Immunotherapeutics”.

 Please go through the URL for Journal home page: http://imprintsonline.org/journal-of-immunology-and-immunotherapeutics/

IMPRINTS Online Publishing uses online review and editorial tracking systems of Editorial Manager® / IMPRINTS Group for quality review process. All works published by IMPRINTS Publishing Group are under the terms of the Creative Commons Attribution License. This permits anyone to copy, distribute, transmit and adapt the work provided the original work and source is appropriately cited. IMPRINTS Publishing Group supports the Bethesda statement on Open Access publishing.

We may again assure you of international quality and standards of our articles published in our journals, using state-of-the-art prominent reviewers and editorial board. We also assure you of our best co-operation always.

If you are interested, you are requested to send a recent passport size photo (to display at our website) and your C.V, Biography (150 words), Research Interests for our records.

We look forward to a close and lasting scientific relationship for the benefit of scientific community.

With best regards,

Stephen H
Managing Editor

Immunology and Immunotherapeutics

Turning down an endowed lectureship because their gender ratio is too skewed towards males #WomenInSTEM

Just got this invitation.  I have edited it to remove some of the identifying factors since I think the specific details do not matter.

Dear Dr. Eisen: 

I am writing to invite you to present a lecture in the endowed XXXX Lecture Series at XXXX Univsersity.  The XXXX Lecture is a platform to allow leaders in the areas of XXXX to communicate research advances to a general audience.  Recent speakers include XXXX and XXXX and XXXX.  For your talk, we were hoping you could discuss advances in understanding human microbiomes and their significance to health.  I think this is an enormously important area that the general public is still largely unaware of, and also an area with incredible promise that will see exponential progress going forward.  I know this is relatively short notice, but we are hoping that the lecture would be sometime in October or November of 2014. 

The lectureship includes an honorarium of $2,000 in addition to covering your travel, lodging, and meal expenses.  Because XXXX we generally hold duplicate lectures XXXX on consecutive evenings (typical Tues-Wed or Wed-Thurs).  Speakers generally arrive early in the afternoon of the day of the first lecture, and depart after the second lecture the following day. Between the two lectures there will be a dinner and meetings with research or medical groups and an outreach activity in which, if you are willing, you would XXXX. 

We would be honored to have you speak in the XXXX series  and hope you will be able to fit us into your busy schedule. 

Sincerely, 

XXXX

Well, wow.  That would be really nice.  I do not think I have ever given a named lecture before.  Then I made one fateful decision – I decided to look up who had spoken at the lecture series previously.  And, well, it was not what I wanted to see.  And another lecture series from the same institute had the same problem.  Bad gender ratio of speakers.  So, after some thought and a brief discussion with a post doc in my lab Sarah Hird whose opinions I trust on such issues.  I wrote this to the people who invited me:

XXX 

Thank you so much for the invitation and the respect it shows to me that I would be considered for this.  However, when I looked into past lectures in this series I saw something that was disappointing.  From the site XXXX where past lectures are listed I see that the ratio of male to female speakers is 14:3.  I note – the XXXX lecture series – also from XXXX – also has a skewed ratio (11:2).  As someone who is working actively on multiple issues relating to gender bias in science, I find this very disappointing.  I realize there are many issues that contribute to who comes to give a talk in a meeting or seminar series or such. But I simply cannot personally contribute to a series which has such an imbalance and I would suggest that you consider whether anything in your process is biased in some way. 

Sincerely, 

Jonathan Eisen



UPDATE 7/22/2014

The person who invited me responded to my email.  Here is what this person wrote:

Jonathan: 

Thanks for response and your concern.  I noted this uneven representation also when I took over the series a couple years ago and have worked (not as successfully as I would have liked) to get more balance.  For example, in trying to book the XXXX lecture this year I have been turned down by XXXX, but did manage to book XXXX.  For the XXXX lecture series, a related but separate series aimed at professional rather than the lay public audiences that I also run, I was turned down by XXXX, but I’ve booked XXXX.  You have been the sole male invite to either series this year.   But I will agree that in previous years the ratio has not been as good as I would like.  In part this is because it seems even harder to book top female speakers than males speakers – presumably because they are in such demand and are always asked to be representative on a million committees etc, but in past XXXX I did bring in XXXX and XXXX.  For the XXXX lecture I brought in XXXX last year.  So numbers are getting better, and this year the ratio will be at least 2:1 (max) in favor of females. 

But you point is well taken, and perhaps I can even things out a little with your help.  Although I think microbiomes are an incredibly important and under appreciated area, this is not my area of research, so I don’t know the players.  If you can recommend female researchers in this area who are dynamic speakers that would be able to give a very publicly accessible talks (TED talk level) on the topic, and ideally are also doing great research too, I would be happy to invite them.  

Best, 

XXXX

So then I wrote back

Ruth Ley at Cornell is great – works on evolution of microbiomes and
has done some fantastic stuff in humans and plants. See
https://micro.cornell.edu/people/ruth-ley. And gives very good talks. 

Katie Pollard at UCSF is completely brilliant and awesome and gives
amazing talks
http://www.docpollard.com. She works on many things including microbiomes 

Jessica Green http://pages.uoregon.edu/green/ at Oregon does not work
on human microbimes per se but does work on microbiomes in buildings
and connects that to human microbiomes.  She is also a TED fellow and
has given two great TED talks and is one of the best speakers I know. 

Julie Segre at NHGRI is great too.  Hard core medical microbiome work:
http://www.genome.gov/Staff/Segre/.



UPDATE 2: Storify of responses

//storify.com/phylogenomics/giving-up-endowed-lectureship-due-to-gender-ratio/embed?border=false//storify.com/phylogenomics/giving-up-endowed-lectureship-due-to-gender-ratio.js?border=false[View the story “Giving Up Endowed Lectureship Due To Gender Ratio of Speakers ” on Storify]




UPDATE 3: Some links writing about this



For related posts by me see my collection on Diversity in STEM.  Some key posts of possible interest include:

Other diversity related posts