Kelly Weinersmith
Exit seminar Tuesday (Dec 2nd) at 9AM in 2120J Wickson Hall.
"Parasite manipulation of host phenotype: mechanisms, behavior, ecology, and evolution."
Kelly Weinersmith
Exit seminar Tuesday (Dec 2nd) at 9AM in 2120J Wickson Hall.
"Parasite manipulation of host phenotype: mechanisms, behavior, ecology, and evolution."
UC Davis Women in Medicine and Health Sciences
WIMHS, in Partnership with the Department of Pathology and Laboratory Medicine
PRESENTS:
Debra G.B. Leonard, MD, PhD Professor and Chair
“Leaning In and Moving Up”
January 22, 2015
12:00 pm – 1:00 pm
(Broadway Café box-lunch provided)
FSSB Building, Room 2030 4800 2nd Avenue, Sacramento
Register Online:
https://somapp.ucdmc.ucdavis.edu/academicaffairs /courses/secure/Courses.cfm?Status=10
Dr. Debra G.B. Leonard served as Chief Diversity Officer at Weill-Cornell Medical School. Dr. Leonard will discuss her experience with best practices and challenges in diversifying faculty from her perspective while at WCU.
Debra G. B. Leonard, MD, PhD Professor and Chair Department of Pathology and Laboratory Medicine University of Vermont Medical Center
WIMHS: http://www.ucdmc.ucdavis.edu/wimhs/index.html WIMHSFacebook: http://www.facebook.com/pages/UC- Davis-Women–in-Medicine-and_Science/218743748158322
So – I participated in a fundraiser for Emily Levine’s “The Edge of Chaos” film a week ago. And one of the key guests was Matt Groening. Not only did I get to hang out with him and discuss fecal transplants with him (really) but I had a front row seat to Matt discussing the history of how he came up with the general outline of the Simpson’s characters.
And in addition to this being just awesome to witness, one part of it struck me. See the video below and in particular the part that struck me was the beginning:
So – since I discussed fecal transplants with Matt and since he gave a good description of facial characteristics being easy to identify, I think we should definitely (1) try and get him to include microbiomes on the Simpsons and (2) for our work we should use Simpsons characters as model faces for different microbiomes …
Oh and I also showed Groening some of the pics of my kids reading his “Hell” books:
The Gordon and Betty Moore Foundation is hiring a Program Officer for their Marine Microbiology Initative (see attachment). I love the Marine Microbiology Initiative and this could be a very interesting job. See http://www.moore.org/about/careers for more info.
From their site:
Infectious diseases are major contributors to global morbidity and mortality, and have a devastating impact on public health. The World Health Organization estimates that 1 in 3 deaths worldwide are due to an infectious disease, with a disproportionate number occurring in developing regions.
While the completion of the first genome sequence of a pathogen, Haemophilus influenzae, in 1995 took decades of work, in recent years, high-throughput technologies have revolutionized the study of pathogens. Whole-genome sequences are now achievable within days and available for multiple pathogens, including those that cause neglected tropical diseases, which has advanced our understanding of the biology and evolution of pathogens. Crucially, such research has enabled important advances in the clinical management of infectious diseases, and continues to guide public health interventions worldwide.
In this cross-journal special issue, guest edited by George Weinstock (The Jackson Laboratory for Genomic Medicine, USA) and Sharon Peacock (University of Cambridge, UK), Genome Biology and Genome Medicine take stock of where we are now, with a collection of primary research and commissioned articles that discuss different aspects of the genomics of infectious diseases in human populations, including the progress made towards their eradication, and the remaining challenges in terms of both fundamental science and clinical management.
I have copied the list from their site (I am pretty sure this is OK since these are #OpenAccess journals but not 100% sure):
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Ripudaman K Bains Genome Biology 2014, 15:529 (22 November 2014)
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Lucy M Li, Nicholas C Grassly, Christophe Fraser Genome Biology 2014, 15:541 (22 November 2014)
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The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated
from the biopsy of a migrating brain lesion Hayley M Bennett, Hoi Ping Mok, Effrossyni Gkrania-Klotsas, Eleanor J Stanley,
Isheng J Tsai, Nagui M Antoun, Avril Coghlan, Bhavana Harsha, Alessandra Traini, Diogo M Ribeiro, Sascha Steinbass, Sebastian B Lucas, Kieren S.J Allinson, Stephen J Price, Thomas S Santarius, Andrew J Carmichael, Peter L Chiodini, Nancy Holroyd, Andrew F Dean, Matthew Berriman Genome Biology 2014, 15:510 (21 November 2014) |
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Patrick Tang, Jennifer L Gardy Genome Medicine 2014, 6:104 (20 November 2014)
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YMAP: a pipeline for visualization of copy number variation and loss of
heterozygosity in eukaryotic pathogens Darren Abbey, Jason Funt, Mor N Lurie-Weinberger, Dawn A Thompson, Aviv Regev,
Chad L Myers, Judith Berman Genome Medicine 2014, 6:100 (20 November 2014) |
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Jeffrey S McLean, Roger S Lasken Genome Medicine 2014, 6:108 (20 November 2014)
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Michael Inouye, Harriet Dashnow, Lesley-Ann Raven, Mark B Schultz, Bernard J Pope,
Takehiro Tomita, Justin Zobel, Kathryn E Holt Genome Medicine 2014, 6:90 (20 November 2014) |
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Genomic epidemiology of a protracted hospital outbreak caused by
multidrug-resistant Acinetobacter baumannii in Birmingham, England Mihail R Halachev, Jacqueline Chan, Chrystala I Constantinidou, Nicola Cumley,
Craig Bradley, Matthew Smith-Banks, Beryl Oppenheim, Mark J Pallen Genome Medicine 2014, 6:70 (20 November 2014) |
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George M Weinstock, Sharon J Peacock Genome Biology 2014, 15:528 (19 November 2014)
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Todd J Treangen, Brian D Ondov, Sergey Koren, Adam M Phillippy Genome Biology 2014, 15:524 (19 November 2014)
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Lewis Z Hong, Shuzhen Hong, Han Teng Wong, Pauline PK Aw, Cheng Yan, Andreas Wilm,
Paola F de Sessions, Seng Gee Lim, Niranjan Nagarajan, Martin L Hibberd, Stephen R Quake, William F Burkholder Genome Biology 2014, 15:517 (19 November 2014) |
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Sharon J Peacock, George M Weinstock Genome Medicine 2014, 6:103 (19 November 2014)
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Genomics and infectious disease: a call to identify the ethical, legal and social
implications for public health and clinical practice Gail Geller, Rachel Dvoskin, Chloe L Thio, Priya Duggal, Michelle H Lewis, Theodore C Bailey,
Andrea Sutherland, Daniel A Salmon, Jeffrey P Kahn Genome Medicine 2014, 6:106 (18 November 2014) |
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Yonatan H Grad, Marc Lipsitch Genome Biology 2014, 15:538 (18 November 2014)
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Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA
viruses in clinical and biological samples Christian B Matranga, Kristian G Andersen, Sarah Winnicki, Michele Busby,
Adrianne D Gladden, Ryan Tewhey, Matthew Stremlau, Aaron Berlin, Stephen K Gire, Eleina England, Lina M Moses, Tarjei S Mikkelsen, Ikponmwosa Odia, Philomena E Ehiane, Onikepe Folarin, Augustine Goba, S.Humarr Khan, Donald S Grant, Anna Honko, Lisa Hensley, Christian Happi, Robert F Garry, Christine M Malboeuf, Bruce W Birren, Andreas Gnirke, Joshua Z Levin, Pardis C Sabeti Genome Biology 2014, 15:519 (18 November 2014) |
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Yanjiao Zhou, Martin J Holland, Pateh Makalo, Hassan Joof, Chrissy h Roberts,
David Maybe, Robin L Bailey, Matthew J Burton, George M Weinstock, Sarah E Burr Genome Medicine 2014, 6:99 (15 November 2014) |
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Proteomics informed by transcriptomics reveals Hendra virus sensitizes
bat cells to TRAIL mediated apoptosis James W Wynne, Brian J Shiell, Glenn A Marsh, Victoria Boyd, Jennifer A Harper,
Kate Heesom, Paul Monaghan, Peng Zhou, Jean Payne, Reuben Klein, Shawn Todd, Lawrence Mok, Diane Green, John Bingham, Mary Tachedjian, Michelle L Baker, David Matthews, Lin-Fa Wang Genome Biology 2014, 15:532 (15 November 2014) |
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A phylogeny-based sampling strategy and power calculator informs
genome-wide associations study design for microbial pathogens Maha R Farhat, B Shapiro, Samuel K Sheppard, Caroline Colijn, Megan Murray Genome Medicine 2014, 6:101 (15 November 2014)
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Paolo Gabrieli, Andrea Smidler, Flaminia Catteruccia Genome Biology 2014, 15:535 (15 November 2014)
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Jonathan D Herman, Daniel P Rice, Ulf Ribacke, Jacob Silterra, Amy A Deik, Eli Moss,
Kate M Broadbent, Daniel E Neafsey, Michael M Desai, Clary B Clish, Ralph Mazitschek, Dyann F Wirth Genome Biology 2014, 15:511 (14 November 2014) |
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Anastasia Koch, Robert Wilkinson Genome Biology 2014, 15:520 (13 November 2014)
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Chase L Beisel, Ahmed A Gomaa, Rodolphe Barrangou Genome Biology 2014, 15:516 (8 November 2014)
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Evolution of extensively drug-resistant Mycobacterium tuberculosis from a
susceptible ancestor in a single patient Vegard Eldholm, Gunnstein Norheim, Bent von der Lippe, Wibeke Kinander,
Ulf R Dahle, Dominique A Caugant, Turid Mannsåker, Anne Mengshoel, Anne Dyrhol-Riise, Francois Balloux Genome Biology 2014, 15:490 (7 November 2014) |
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Digby F Warner, Valerie Mizrahi Genome Biology 2014, 15:514 (7 November 2014)
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Onikepe A Folarin, Anise N Happi, Christian T Happi Genome Biology 2014, 15:515 (7 November 2014)
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Bringing non-human primate research into the post-genomic era: how
monkeys are teaching us about elite controllers of HIV/AIDS Eric J Vallender Genome Biology 2014, 15:507 (7 November 2014)
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Whole genome sequencing of SIV-infected macaques identifies candidate loci that
may contribute to host control of virus replication Adam J Ericsen, Gabriel J Starrett, Justin M Greene, Michael Lauck, Muthuswamy Raveendran,
David Deiros, Mariel S Mohns, Nicolas Vince, Brian T Cain, Ngoc H Pham, Jason T Weinfurter, Adam L Bailey, Melisa L Budde, Roger W Wiseman, Richard Gibbs, Donna Muzny, T homas C Friedrich, Jeffrey Rogers, David H O’Connor Genome Biology 2014, 15:478 (7 November 2014) |
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Comparative analyses of Legionella species identifies genetic features of strains
causing Legionnaires’ Disease Laura Gomez Valero, Christophe Rusniok, Monica Rolando, Mario Neou,
Delphine Dervins-Ravault, Jasmin Demirtas, Zoe Rouy, Robert J Moore, Honglei Chen, Nicola K Petty, Sophie Jarraud, Jerome Etienne, Michael Steinert, Klaus Heuner, Simonetta Gribaldo, Claudine Médigue, Gernot Glöckner, Elizabeth L Hartland, Carmen Buchrieser Genome Biology 2014, 15:505 (3 November 2014) |
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Frank Hanses, Christelle Roux, Paul M Dunman, Bernd Salzberger, Jean C Lee Genome Medicine 2014, 6:93 (3 November 2014)
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Gene flow in environmental Legionella pneumophila leads to genetic and
pathogenic heterogeneity within a Legionnaires’ disease outbreak Paul McAdam, Charles vander broek, Diane Lindsay, Melissa Ward, Mary Hanson,
Michael Gillies, Mike Watson, Joanne Stevens, Giles Edwards, Ross Fitzgerald Genome Biology 2014, 15:504 (3 November 2014) |
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Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a
transcription factor overexpression-derived regulatory network Tige R Rustad, Kyle J Minch, Shuyi Ma, Jessica K Winkler, Samuel Hobbes, Mark J Hickey,
William Brabant, Serdar Turkarslan, Nathan D Price, Nitin S Baliga, David R Sherman Genome Biology 2014, 15:502 (3 November 2014) |
There is really not much to say other than to point everyone to this article: Bacteria on Russian ‘sex satellite’ survive reentry | Science | The Guardian
It defininely wins the strangest microbial headline of the month. The article restates some of the silly claims about how what they are finding supports panspermia .. but ignore the article and just enjoy the headline.
MMI will also consider projects to develop genetic tools and methods with other microeukaryotes that show promise for expanding the way the field can test hypotheses. If your idea does not fit category 1 or 2 above, please contact us prior to submitting your EOI.
MMI encourages EOIs from “inter-organismal” teams of researchers – i.e., complementary groups that have experience in a well-established model system and with a microeukaryote that is not currently genetically tractable – whose collaborative effort will bring innovative approaches to the field.
MMI invites you to send an expression of interest via email that briefly outlines a research project (one paragraph or less), using the following template:
The opportunities that best align with MMI’s strategies and goals will be invited to submit proposals. MMI has allocated $7–10M to support this effort and anticipates making multiple, 2–3 year awards beginning in mid- 2015.
Please submit your EOI by Tuesday January 6, 2015 to Samantha Forde at samantha.forde@moore.org.
Postdoctoral Position in Microbial Ecology and Evolution
Jessica Green at the University of Oregon Green (http://pages.uoregon.edu/green/) is currently seeking a postdoctoral researcher to explore fundamental questions in microbial ecology and evolution. Applicants should have a PhD in a biological, computational, mathematical, or statistical field with extensive training using theory and/or modeling to understand the ecology and evolution of complex biological communities, and strong writing skills. Experience developing and applying quantitative phylogenetic ecological methods is highly desirable, but not explicitly required for candidates who have otherwise demonstrated strong quantitative skills.
The successful candidate will play a key role in the Seagrass Microbiome Project (http://seagrassmicrobiome.org) in collaboration among Jonathan Eisen https://phylogenomics.wordpress.com), Jay Stachowicz http://www-eve.ucdavis.edu/stachowicz/stachowicz.shtml, and Jenna Lang (http://jennomics.com/) at the University of California, Davis. The Seagrass Microbiome Project aims to integrate the long interest in seagrass ecology and ecosystem science with more recent work on microbiomes to produce a deeper, more mechanistic understanding of the ecology and evolution of seagrasses and the ecosystems on which they depend. Our studies of the community of microorganisms that live in and on seagrasses – the seagrass “microbiome” – will contribute to a broader understanding of host-microbe systems biology, and will benefit from ongoing University of Oregon research programs including the Microbial Ecology and Theory of Animals Center for Systems Biology (http://meta.uoregon.edu/) and the Biology and Built Environment Center (http://biobe.uoregon.edu/).
The position is available for 1 year with the possibility for renewal depending on performance. The start date is flexible. Please email questions regarding the position to Jessica Green (jlgreen).
To apply
A complete application will consist of the following materials:
(1) a brief cover letter explaining your background and career interests
(2) CV (including publications)
(3) names and contact information for three references
Submit materials to ie2jobs. Subject: Posting 14431
To ensure consideration, please submit applications by November 1, 2014, but the position will remain open until filled.
Women and minorities encouraged to apply. We invite applications from qualified candidates who share our commitment to diversity.
The University of Oregon is an equal opportunity, affirmative action institution committed to cultural diversity and compliance with the ADA. The University encourages all qualified individuals to apply, and does not discriminate on the basis of any protected status, including veteran and disability status.
POSTDOC ON HORIZONTAL GENE TRANSFER AND GENOME EVOLUTION
An NSF-funded
postdoctoral position is available to work on a collaborative project between the labs of Dr. Jeff Palmer (Department of Biology, Indiana University, Bloomington) and Dr. Claude dePamphilis (Department of Biology, Penn State University, University Park). This project is a follow-up to papers on the mitochondrial and nuclear genomes of the basal angiosperm Amborella that were led by our labs and published in the Dec. 20, 2013 issue of Science. The project focuses on evolutionary gene transfer, including transfer of mitochondrial and plastid sequences to the nucleus of Amborella, and the extensive horizontal transfer of foreign mitochondrial sequences to the mitochondrion of Amborella.
This
is a strictly bioinformatic/comparative genomic project involving extensive analysis of genome-scale sequence data. A Ph.D. in computational biology, evolutionary genetics, or a related field is required, and proficiency in computer programming is expected. Competitive candidates will have a strong record of prior publication in genome-scale data analysis, including bioinformatic pipeline construction, phylogenomics, and/or genome evolution. This position is funded for two years, with continued appointment dependent upon availability of funding. Salary will be commensurate with experience, and full benefits are included.
To apply,
please submit, as a single unified PDF, a cover letter detailing research interests and experience, a C.V., and contact information for three professional references to jpalmer) or Claude dePamphilis (cwd3).
Indiana University
is an equal employment and affirmative action employer and a provider of ADA services. All
qualified applicants will receive consideration for employment without regard to age, ethnicity, color, race, religion, sex, sexual orientation or identity, national origin, disability status, or protected veteran status.
Postdoc on HGT & genome evolution in plants – Jeff Palmer & Claude dePamphilis.docx