Major lesson from #ASM2012 meeting: microblogs & microbiology go together well

Well without a doubt the biggest surprise to me of the American Society for Microbiology General Meeting was the massive increase in the use of Twitter compared to previous years.  Microbiologist are clearly just way way ahead of the curve compared to other scientists on this.  The tweets and retweets and discussion of tweets was so extensive that #ASM2012 was a trending topic on twitter for much of the time during the meeting:

For those not familiar with Twitter – this abbreviation w/ the # is known as a hashtag – and if everyone at a meeting uses this hashtag in their posts about the meeting then it is easy to keep track of all the meeting posts by searching for posts with that hashtag.  Such searches can be done in real time with various Twitter clients or via the Twitter website.

And if you followed in real time the #ASM2012 you were treated to a broad real-time coverage of pretty much the whole meeting.  At most broadly focused science meetings I have been at recently – even ones with 1000s of people like #AAAS – the use of Twitter has been relatively limited at best.  Sometimes a single session is covered well but very rarely is the whole meeting covered.  So this ASM meeting was indeed different.

I tried to create a “Storification” of all the Tweets from the meeting but Storify seems to crash when one includes so many tweets so that did not work.

So I tried to create my own archive via Twitter – by copying and pasting the posts from each day (some got left out here but it is decent coverage).   It is not as pretty as Storification but it works.  Still working on a full archive but Twitter makes it kind of difficult to do alas.

One thing missing however was the use of microbiology related hashtags for topics.  Seems we really need to get some coordination here to make it easier to search through and find tweets of interest.  Here are some I have used in the past and may be worth using if you want more people to notice your tweets.

#microbes
#bacteria
#archaea
#microbiology
#pathogens
#rRNA
#Antibiotics
#viruses
#yeast
#microbiome

Anyway – keep up the good work all you microbe-focused tweeters.  And though microblogging (i.e., Twitter and related things) is great – don’t forget to blog too.  See my growing list of microbiology related blogs and please add to it – either if you know of ones I missed – or by creating your own.

Quick summary of session at #ASM2012 on “The Great Indoors” #microBEnet

 The session at the ASM 2012 meeting on “The Great Indoors” seems to have gone well. I will be writing up a more detailed report but here is a quick summary done via “Storify”.

http://storify.com/phylogenomics/asm2012-microbenet.js[<a href=”http://storify.com/phylogenomics/asm2012-microbenet” target=”_blank”>View the story “Session at #ASM2012 on The Great Indoors: Recent Advances in the Ecology of Built Environments ” on Storify</a>]

Collecting links to blogs that focus entirely or partly on microbiology topics #ASM2012

Making a list of blogs that focus entirely or partly on microbiology topics.  Here are some.  Would love suggestions for others. Obviously not all are of equal quality in terms of the writing or the science but the diversity is impressive.

  1. Aetiology from Tara Smith scienceblogs.com/aetiology
  2. A Flu Diary http://afludiary.blogspot.com/
  3. AIDS.GOV blog.aids.gov/
  4. Antibiotics: the perfect storm from David Shlaes antibiotics-theperfectstorm.blogspot.com/
  5. Antimicrobial Resistance from Miriam Barlow antimicrobial.blogspot.com
  6. Aspergillus Website Blog aspergillusblog.blogspot.com/
  7. Avian Flu Diary afludiary.blogspot.com/
  8. BacterioFiles from Jesse Noar bacteriofiles.blogspot.com
  9. Bacpathogenomics bacpathgenomics.wordpress.com/
  10. Bacteriophage, microbiology and the battle for funding from Philip Skipper phageresearch.blogs.lincoln.ac.uk/
  11. BioBE center Blog: biobe.uoregon.edu/
  12. Blastocystis Blog: blastocystisblog.blogspot.com/
  13. Barf Blog barfblog.foodsafety.ksu.edu/barfblog 
  14. Chimeras chimerasthebooks.blogspot.com/
  15. CoastalPathogens coastalpathogens.wordpress.com/
  16. Contagions from Michelle Ziegler contagions.wordpress.com
  17. Controversies in Hospital Infection Prevention haicontroversies.blogspot.com/
  18. Creepy Deadly Wonderful Parasites parasitewonders.blogspot.com/
  19. Curiosidades de la Microbiología curiosidadesdelamicrobiologia.bl…
  20. Cyanobacterial Adventures cyanobacterialadventures.blogspot.com/
  21. Daily Parasite dailyparasite.blogspot.com/
  22. Daniel Wilson’s Blog blog.danielwilson.me.uk/
  23. Dawn in Antarctica dawninantarctica.blogspot.com/
  24. El buit del temps blocs.mesvilaweb.cat/bloc/view/id/5664
  25. End the Neglect endtheneglect.org/
  26. Epidemonomics www.cddep.org/blog
  27. ERV from Abbie Smith scienceblogs.com/erv/
  28. Food Poison Journal www.foodpoisonjournal.com/
  29. Food Safety and Environmental Health blog www.safefoodsblog.com/
  30. Foraminifera Blog foraminifer.blogspot.com/
  31. Fun with Microbiology (What’s Buggin’ You?) http://thunderhouse4-yuri.blogspot.com/
  32. History of Vaccines www.historyofvaccines.org/blog
  33. HIV This Week http://hivthisweek.unaids.org/
  34. Hospital Infection Control and Prevention hicprevent.blogs.ahcmedia.com/
  35. Human Microbiome Journal Club hmjournalclub.wordpress.com/
  36. Indian Initiative for Management of Antibiotic Resistance save-antibiotics.blogspot.com/
  37. Infection Landscapes infectionlandscapes.org
  38. Infectious Diseases Today bactiman63.blogspot.com/
  39. International AIDS Vaccine Initiative www.iavireport.org/IRblog/default.aspx 
  40. It’s a small world fuckyeahmicrobiology.tumblr.com/
  41. Jason Tetro at the Huffington Post www.huffingtonpost.ca/jason-tetro/ *
  42. JHU Phage Hunters jhuphagehunters.wordpress.com/
  43. Lab Rat blogs.scientificamerican.com/lab…
  44. mBIO mbioblog.asm.org/mbiosphere
  45. Malaria World malariaworld.org/blog
  46. Matryoshka from Jeff Smith matryoshka.org/
  47. Memory Reactivation memoryreactivation.wordpress.com/
  48. Memoirs of a Defective Brain defectivebrain.fieldofscience.com/
  49. microbelog microbelog.wordpress.com/
  50. MicroBichitos blogs.elpais.com/microbichitos
  51. Microbial Diversity from Irene Newton microdiv.blogspot.com/
  52. microBEnet blog from Jonathan Eisen, David Coil, Holly Bik www.microbe.net/microbenet-blog/ 
  53. Microbe Matters from KD Shives http://kdshives.com
  54. Microbiology Bytes from AJ Cann microbiologybytes.com/blog
  55. Microblogology from Lorraine Cramer  microblogology.com/
  56. Microbiology Stories bacteriastories.blogspot.com/
  57. Mike the Mad Biologist mikethemadbiologist.com/
  58. Miss Parasitos missparasitos.blogspot.com/  AND missparasitesinenglish.blogspot.com/
  59. Monotreme’s Blog monotreme1000.wordpress.com/ *
  60. MyChrobial Romance from David Baltrus mychrobialromance.blogspot.com/
  61. Mycorant mycorant.com
  62. MycorWeb Fungal Genomics mycor.nancy.inra.fr/blogGenomes
  63. Mystery Rays from Outer Space www.iayork.com/MysteryRays/
  64. Not Exactly Rocket Science from Ed Yong blogs.discovermagazine.com/notrocketscience/
  65. Of Bacteria and Men from Robin Tecon ofbacteriaandmen.blogspot.com/
  66. One in Seven People http://oneinsevenpeople.co.uk/
  67. Outbreak News outbreaknews.com/
  68. Parasite of the Day dailyparasite.blogspot.com/
  69. Parasites http://www.rosemarydrisdelle.com/
  70. Pathogens, Genes and Genomes pathogenomics.bham.ac.uk/blog
  71. Pharmaceutical Microbiology by Tim Sandle pharmig.blogspot.com/
  72. Public Health Matters from the CDC blogs.cdc.gov/publichealthmatters/
  73. Rapid Microbiology Methods rapidmicromethods.com/ 
  74. RRResearch from Rosie Redfield rrresearch.blogspot.com
  75. Rule of 6ix from Connor Bamford ruleof6ix.fieldofscience.com
  76. Russell’s Blog from Russell Neches vort.org/
  77. Safe Food from John Brooks foodsafetywithjaybee.blogspot.com/
  78. Skeptic Wonder skepticwonder.fieldofscience.com
  79. Skewed Distribution skeweddistribution.com/
  80. Small Things Considered schaechter.asmblog.org/schaechter
  81. Smaller Questions www.smallerquestions.org/
  82. Sociobiology sociobiology.wordpress.com/
  83. Spirochetes Unwound spirochetesunwound.blogspot.com
  84. Superbug wired.com/wiredscience/superbug
  85. Superbugs and Drugs superbugsanddrugs.blogspot.com/
  86. Stringent Response stringentresponse.blogspot.com/
  87. Symbionticism from Seth Bordenstein symbionticism.blogspot.com/
  88. The Artful Amoeba blogs.scientificamerican.com/art…
  89. The Febrile Muse febrilemuse-infectious-disease.blogspot.com/
  90. The Genome Factory thegenomefactory.blogspot.com/
  91. The “Germ Guy” Blog: germguy.wordpress.com/
  92. The Hyphal Tip by Jason Stajich fungalgenomes.org/blog
  93. The Intestinal Gardner intestinalgardener.blogspot.com/
  94. The Loom from Carl Zimmer blogs.discovermagazine.com/loom
  95. The Oceloid from PSI Wavefunction blogs.scientificamerican.com/oceloid
  96. The Parasite Diary parasitediary.wordpress.com/
  97. The Tree of Life from Jonathan Eisen phylogenomics.blogspot.com
  98. Ultraphyte from Joan Slonczewski ultraphyte.com/
  99. We Beasties from Kevin Bonham scienceblogs.com/webeasties/
  100. The View from a Microbiologist from Samantha Price theviewfromamicrobiologist.fieldofscience.com/
  101. Viroblogy from Ed Rybicki http://rybicki.wordpress.com/
  102. Virology Blog from Vincent Racaniello virology.ws
  103. Viral Bioinformatics from Chris Upton athena.bioc.uvic.ca/blog/
  104. Worms and Germs www.wormsandgermsblog.com/
  105. Zoonotica zoonotica.wordpress.com
Podcasts and Videocasts


Not screened yet but considering adding to the above list

To add to list

Other stuff about microbes but not quite bloggy enough for my list above

Microbiology related blogs that are appear to be no longer active or very rarely active

Twitter lists
Paper.lis
Scoop.It
Science Blogs Networks that might have some microbial content not listed above

Coming up at the #ASM2012 mtg. "The Great Indoors: Recent Advances in the Ecology of Built Environments"

The American Society for Microbiology meeting is starting tomorrow and there are multiple things related to microbiology of the built environment there.  These include a session that was organized by Brendan Bohannan which I am chairing.

The details of the session are below:

Session Title: The Great Indoors: Recent Advances in the Ecology of Built Environments

Session Date/Time: Sunday Jun 17, 2012 3:00 PM – 5:30 PM

Session Room: Esplanade Ballroom 300

Description: Although humans in industrialized countries spend nearly 90% of their time in enclosed buildings, we know very little about the biology of the indoor environment. However, this is starting to change. Over the past few years, the field of indoor ecology has grown dramatically. Ecologists are beginning to apply ecological theory and concepts to understanding buildings as ecosystems. A new understanding of the biodiversity of built environments is emerging, as well as a new appreciation of the importance of interactions between humans and non-human life indoors. The proposed symposium will showcase this emerging understanding. We will feature presentations that demonstrate the utility of ecological theory for understanding built environments, that describe the dynamics of biodiversity indoors and that illustrate the interactions of humans with indoor ecology. Our focus will be on the ecology of the dominant forms of non-human life indoors – microorganisms – and their interactions with humans.

 Talks

  • Jonathan Eisen microBEnet: the microbiology of the built environment network
  • Nicholas Be: Examination of the environmental air microbiome using deep sequencing
  • Katie Kirsch: A microbial analysis of environmental surfaces in hotel rooms
  • Mark Hernandez: Stability of airborne microbes to master environmental variables
  • John Senko: Microbial communities associated with flue gas desulfurization systems
  • Kimberly Ross: Drinking water delivery networks as microbial ecosystems
  • Jordan Peccia: The effect of environmental conditions on the allergenic potency of Aspergillus fumigatus spores