Mesquite "A modular system for evolutionary analysis" v3.0 released from Team Maddison

Just found out about this on Facebook via Rod Page: Mesquite V3.0  has been released.  Mesquite is from Team Maddison (Wayne and David).  I have been using their software since 1987 when I took Stephen Jay Gould’s course at Harvard and they were TAs for the course demoing an early version of MacClade.   Lots of nice features and it is available in Mac, Unix/Linux, and Windows versions.   They describe “What Mesquite Does” on their Wikispaces site in the following way:

Mesquite is software for evolutionary biology, designed to help biologists manage and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Because it is modular, the analyses and management features available depend on the modules installed. Here is a brief overview of some of Mesquite’s features. See also a more complete outline of features, and the Mesquite Project Youtube channel, with instructional videos helping you learn Mesquite.

Despite Mesquite’s broad analytical capabilities, the developers of Mesquite find that we use Mesquite most often to provide a workflow of data editing, management, and processing. We will therefore begin there.

Definitely worth a look.

Author: Jonathan Eisen

I am an evolutionary biologist and a Professor at U. C. Davis. (see my lab site here). My research focuses on the origin of novelty (how new processes and functions originate). To study this I focus on sequencing and analyzing genomes of organisms, especially microbes and using phylogenomic analysis

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