Talk at #UCDavis 12/11 by Evelyn Lincoln “Publication Anxiety in Early Modern Italy”

Please join Innovating Communication and Scholarship (ICIS), the Center for Science and Innovation Studies (CSIS), and Science and Technology Studies for a lunchtime event with Evelyn Lincoln on:

Publication Anxiety in Early Modern Italy

When: Thursday December 11th from 12:10 – 1:30 PM

Where: Room SS&H 1246 (STS /CSIS Room)

Discussant: Alessandro Delfanti

Lunch provided. Please RSVP if you plan to attend.

Abstract: Publishing a book in

early modern Rome meant braving the Inquisition and the difficulties of

Renaissance business relationships to enter a conversation taking place

in print that was often less than civil.

Authors worried about being accused of claiming to be more

knowledgeable than they really were. On the other hand, they also

actually may have been presenting themselves as something they were not,

and worried about being found out. Some authors found themselves

with time on their hands as their books languished in the presses,

encouraging them to pen long blaming screeds against the publishers who

were forced to include them in the finished book. Strategies for

managing publication anxiety on the part of both publishers

and authors were inventive, original, and different in every book, and

they came to shape the combative and dialogical character of late

sixteenth-century Roman book printing.

Evelyn Lincoln is Professor of the History of Art & Architecture and Italian Studies at Brown University. Her first book,

the Invention of the Italian Renaissance Printmaker (Yale, 2000) traced the careers of pictorial printmakers in Italy in the first century of its development. Brilliant Discourse. Pictures and Readers in Early Modern Rome (Yale, 2014) looks at the role played by the publication of

illustrated technical manuals in forming networks of printers,

publishers, artists and patrons, all of whom were also readers. Her

research investigates knowledge networks formed through making

and using pictures in the early modern world.

After you RSVP, you will be emailed with the paper to be discussed.

Talk at #UCDavis 12/2: Parasite manipulation of host phenotype: mechanisms, behavior, ecology, and evolution

Kelly Weinersmith

Exit seminar Tuesday (Dec 2nd) at 9AM in 2120J Wickson Hall.

"Parasite manipulation of host phenotype: mechanisms, behavior, ecology, and evolution."

Exit Seminar Flyer Weinersmith.pdf

At #UCDavis 1/22 Dr. Debra G.B. Leonard on “”Leaning In and Moving Up”

UC Davis Women in Medicine and Health Sciences

WIMHS, in Partnership with the Department of Pathology and Laboratory Medicine

PRESENTS:
Debra G.B. Leonard, MD, PhD Professor and Chair

“Leaning In and Moving Up”

January 22, 2015

12:00 pm – 1:00 pm

(Broadway Café box-lunch provided)

FSSB Building, Room 2030 4800 2nd Avenue, Sacramento

Register Online:

https://somapp.ucdmc.ucdavis.edu/academicaffairs /courses/secure/Courses.cfm?Status=10

Dr. Debra G.B. Leonard served as Chief Diversity Officer at Weill-Cornell Medical School. Dr. Leonard will discuss her experience with best practices and challenges in diversifying faculty from her perspective while at WCU.

Debra G. B. Leonard, MD, PhD Professor and Chair Department of Pathology and Laboratory Medicine University of Vermont Medical Center

WIMHS: http://www.ucdmc.ucdavis.edu/wimhs/index.html WIMHSFacebook: http://www.facebook.com/pages/UC- Davis-Women–in-Medicine-and_Science/218743748158322

Jan_2015_WIMHS_Leonard_Lecture_Flyer.pdf

A night with Matt Groening and the importance of faeces, feces and faces

So – I participated in a fundraiser for Emily Levine’s “The Edge of Chaos” film a week ago. And one of the key guests was Matt Groening. Not only did I get to hang out with him and discuss fecal transplants with him (really) but I had a front row seat to Matt discussing the history of how he came up with the general outline of the Simpson’s characters.

And in addition to this being just awesome to witness, one part of it struck me. See the video below and in particular the part that struck me was the beginning:

 

Groening
basically said that only a few simple changes in faces can be recognized by people very easily. This reminds me of Jenna Lang’s talk at the Lake Arrowhead meeting this year where she discussed using facial drawings as a form of visualizing microbiome data.

So – since I discussed fecal transplants with Matt and since he gave a good description of facial characteristics being easy to identify, I think we should definitely (1) try and get him to include microbiomes on the Simpsons and (2) for our work we should use Simpsons characters as model faces for different microbiomes …

Oh and I also showed Groening some of the pics of my kids reading his “Hell” books:

So – basically it was a night of feces, faeces and faces.  Seems ideal.

Gordon & Betty Moore Foundation hiring a Program Officer for the Marine Microbiology Initative

The Gordon and Betty Moore Foundation is hiring a Program Officer for their Marine Microbiology Initative (see attachment). I love the Marine Microbiology Initiative and this could be a very interesting job. See http://www.moore.org/about/careers for more info.

MMI Program Officer job description.pdf

Whole issues of Genome Biology/Genome Medicine on "Genomics of Infectious Disease"

Wow this has really got some nice papers: BioMed Central | Article collections | Genomics of infectious diseases special issue.  I note – this goes well as a follow up to the series I co-coordinated in PLOS a few years back: Genomics of Emerging Infectious Disease – PLOS Collections

From their site:

Infectious diseases are major contributors to global morbidity and mortality, and have a devastating impact on public health. The World Health Organization estimates that 1 in 3 deaths worldwide are due to an infectious disease, with a disproportionate number occurring in developing regions. 

While the completion of the first genome sequence of a pathogen, Haemophilus influenzae, in 1995 took decades of work, in recent years, high-throughput technologies have revolutionized the study of pathogens. Whole-genome sequences are now achievable within days and available for multiple pathogens, including those that cause neglected tropical diseases, which has advanced our understanding of the biology and evolution of pathogens. Crucially, such research has enabled important advances in the clinical management of infectious diseases, and continues to guide public health interventions worldwide. 

In this cross-journal special issue, guest edited by George Weinstock (The Jackson Laboratory for Genomic Medicine, USA) and Sharon Peacock (University of Cambridge, UK), Genome Biology and Genome Medicine take stock of where we are now, with a collection of primary research and commissioned articles that discuss different aspects of the genomics of infectious diseases in human populations, including the progress made towards their eradication, and the remaining challenges in terms of both fundamental science and clinical management.

I have copied the list from their site (I am pretty sure this is OK since these are #OpenAccess journals but not 100% sure):


Editorial   Open Access
Ripudaman K Bains Genome Biology 2014, 15:529 (22 November 2014)
Review   Subscription
Lucy M Li, Nicholas C Grassly, Christophe Fraser Genome Biology 2014, 15:541 (22 November 2014)
Research   Open Access
Hayley M Bennett, Hoi Ping Mok, Effrossyni Gkrania-Klotsas, Eleanor J Stanley,
Isheng J Tsai, Nagui M Antoun, Avril Coghlan, Bhavana Harsha, Alessandra Traini, 
Diogo M Ribeiro, Sascha Steinbass, Sebastian B Lucas, Kieren S.J Allinson, 
Stephen J Price, Thomas S Santarius, Andrew J Carmichael, Peter L Chiodini, 
Nancy Holroyd, Andrew F Dean, Matthew Berriman 
Genome Biology 2014, 15:510 (21 November 2014)
Research highlight   Subscription
Patrick Tang, Jennifer L Gardy Genome Medicine 2014, 6:104 (20 November 2014)
Software   Open Access
Darren Abbey, Jason Funt, Mor N Lurie-Weinberger, Dawn A Thompson, Aviv Regev,
Chad L Myers,
Judith Berman Genome Medicine 2014, 6:100 (20 November 2014)
Comment   Subscription
Jeffrey S McLean, Roger S Lasken Genome Medicine 2014, 6:108 (20 November 2014)
Software   Open Access
Michael Inouye, Harriet Dashnow, Lesley-Ann Raven, Mark B Schultz, Bernard J Pope,
Takehiro Tomita, Justin Zobel, Kathryn E Holt 
Genome Medicine 2014, 6:90 (20 November 2014)
Research   Open Access
Mihail R Halachev, Jacqueline Chan, Chrystala I Constantinidou, Nicola Cumley,
Craig Bradley, Matthew Smith-Banks, Beryl Oppenheim, Mark J Pallen 
Genome Medicine 2014, 6:70 (20 November 2014)
Editorial   Open Access
George M Weinstock, Sharon J Peacock Genome Biology 2014, 15:528 (19 November 2014)
Software   Open Access
Todd J Treangen, Brian D Ondov, Sergey Koren, Adam M Phillippy Genome Biology 2014, 15:524 (19 November 2014)
Method   Open Access
Lewis Z Hong, Shuzhen Hong, Han Teng Wong, Pauline PK Aw, Cheng Yan, Andreas Wilm,
Paola F de Sessions, Seng Gee Lim, Niranjan Nagarajan, Martin L Hibberd, Stephen R Quake,
William F Burkholder Genome Biology 2014, 15:517 (19 November 2014)
Editorial   Open Access
Sharon J Peacock, George M Weinstock Genome Medicine 2014, 6:103 (19 November 2014)
Opinion   Free
Gail Geller, Rachel Dvoskin, Chloe L Thio, Priya Duggal, Michelle H Lewis, Theodore C Bailey,
Andrea Sutherland, Daniel A Salmon, Jeffrey P Kahn Genome Medicine 2014, 6:106 (18 November 2014)
Review   Subscription
Yonatan H Grad, Marc Lipsitch Genome Biology 2014, 15:538 (18 November 2014)
Method   Open Access
Christian B Matranga, Kristian G Andersen, Sarah Winnicki, Michele Busby,
Adrianne D Gladden, Ryan Tewhey, Matthew Stremlau, Aaron Berlin, Stephen K Gire, 
Eleina England, Lina M Moses, Tarjei S Mikkelsen, Ikponmwosa Odia, Philomena E Ehiane, 
Onikepe Folarin, Augustine Goba, S.Humarr Khan, Donald S Grant, Anna Honko, 
Lisa Hensley, Christian Happi, Robert F Garry, Christine M Malboeuf, Bruce W Birren, 
Andreas Gnirke, Joshua Z Levin, Pardis C Sabeti

Genome Biology 2014, 15:519 (18 November 2014)

Research   Open Access
Yanjiao Zhou, Martin J Holland, Pateh Makalo, Hassan Joof, Chrissy h Roberts,
David Maybe, Robin L Bailey, Matthew J Burton, George M Weinstock, Sarah E Burr 
Genome Medicine 2014, 6:99 (15 November 2014)
Research   Open Access
James W Wynne, Brian J Shiell, Glenn A Marsh, Victoria Boyd, Jennifer A Harper,
Kate Heesom, Paul Monaghan, Peng Zhou, Jean Payne, Reuben Klein, Shawn Todd, 
Lawrence Mok, Diane Green, John Bingham, Mary Tachedjian, Michelle L Baker, 
David Matthews, Lin-Fa Wang 
Genome Biology 2014, 15:532 (15 November 2014)
Method   Open Access
Maha R Farhat, B Shapiro, Samuel K Sheppard, Caroline Colijn, Megan Murray Genome Medicine 2014, 6:101 (15 November 2014)
Review   Subscription
Paolo Gabrieli, Andrea Smidler, Flaminia Catteruccia Genome Biology 2014, 15:535 (15 November 2014)
Research   Open Access
Jonathan D Herman, Daniel P Rice, Ulf Ribacke, Jacob Silterra, Amy A Deik, Eli Moss,
Kate M Broadbent, Daniel E Neafsey, Michael M Desai, Clary B Clish, Ralph Mazitschek,
Dyann F Wirth Genome Biology 2014, 15:511 (14 November 2014)
Research highlight   Subscription
Anastasia Koch, Robert Wilkinson Genome Biology 2014, 15:520 (13 November 2014)
Research highlight   Subscription
Chase L Beisel, Ahmed A Gomaa, Rodolphe Barrangou Genome Biology 2014, 15:516 (8 November 2014)
Research   Open Access Highly Accessed
Vegard Eldholm, Gunnstein Norheim, Bent von der Lippe, Wibeke Kinander,
Ulf R Dahle, Dominique A Caugant, Turid Mannsåker, Anne Mengshoel, 
Anne Dyrhol-Riise, Francois Balloux 
Genome Biology 2014, 15:490 (7 November 2014)
Opinion   Open Access
Digby F Warner, Valerie Mizrahi Genome Biology 2014, 15:514 (7 November 2014)
Comment   Open Access Highly Accessed
Onikepe A Folarin, Anise N Happi, Christian T Happi Genome Biology 2014, 15:515 (7 November 2014)
Research highlight   Subscription
Eric J Vallender Genome Biology 2014, 15:507 (7 November 2014)
Research   Open Access
Adam J Ericsen, Gabriel J Starrett, Justin M Greene, Michael Lauck, Muthuswamy Raveendran,
 David Deiros, Mariel S Mohns, Nicolas Vince, Brian T Cain, Ngoc H Pham, Jason T Weinfurter,
Adam L Bailey, Melisa L Budde, Roger W Wiseman, Richard Gibbs, Donna Muzny, T
homas C Friedrich, Jeffrey Rogers, David H O’Connor Genome Biology 2014, 15:478 (7 November 2014)
Research   Open Access
Laura Gomez Valero, Christophe Rusniok, Monica Rolando, Mario Neou,
Delphine Dervins-Ravault, Jasmin Demirtas, Zoe Rouy, Robert J Moore, Honglei Chen, 
Nicola K Petty, Sophie Jarraud, Jerome Etienne, Michael Steinert, Klaus Heuner, 
Simonetta Gribaldo, Claudine Médigue, Gernot Glöckner, Elizabeth L Hartland, 
Carmen Buchrieser 
Genome Biology 2014, 15:505 (3 November 2014)
Research   Open Access
Frank Hanses, Christelle Roux, Paul M Dunman, Bernd Salzberger, Jean C Lee Genome Medicine 2014, 6:93 (3 November 2014)
Research   Open Access Highly Accessed
Paul McAdam, Charles vander broek, Diane Lindsay, Melissa Ward, Mary Hanson,
Michael Gillies, Mike Watson, Joanne Stevens, Giles Edwards, Ross Fitzgerald 
Genome Biology 2014, 15:504 (3 November 2014)
Research   Open Access Highly Accessed
Tige R Rustad, Kyle J Minch, Shuyi Ma, Jessica K Winkler, Samuel Hobbes, Mark J Hickey,
William Brabant, Serdar Turkarslan, Nathan D Price, Nitin S Baliga, David R Sherman Genome Biology 2014, 15:502 (3 November 2014)

Strangest microbial headline of month: Bacteria on Russian ‘sex satellite’ survive reentry

There is really not much to say other than to point everyone to this article: Bacteria on Russian ‘sex satellite’ survive reentry | Science | The Guardian

It defininely wins the strangest microbial headline of the month.  The article restates some of the silly claims about how what they are finding supports panspermia .. but ignore the article and just enjoy the headline.

Moore Foundation: Request for Expressions of Interest: Increasing the Potential of Marine Microeukaryotes as Experimental Model Systems through the Development of Genetic Tools

Got this from the Gordon and Betty Moore Foundation and they said I could post it here.

Request for Expressions of Interest: Increasing the Potential of Marine Microeukaryotes as Experimental Model Systems through the Development of Genetic Tools

Marine Microbiology Initiative Gordon and Betty Moore Foundation November 21, 2014

The Marine Microbiology Initiative (MMI) at the Gordon and Betty Moore Foundation aims to enable scientists to uncover the principles that govern the interactions among microbes and that influence nutrient flow in the marine environment. MMI is targeting closing gaps in and supporting the advancement of experimental model systems in microbial oceanography to enable new ways to uncover fundamental biological mechanisms.

We are soliciting expressions of interest (EOIs) for early-stage research projects to develop methods to genetically manipulate marine microeukaryotes as a first step in breaking current bottlenecks in the advancement of experimental model systems. MMI has two primary foci for this expression of interest:

  1. Development of genetic tools for diatoms. Diatoms are key players in the world’s oceans, generating ~20% of the world’s organic carbon, and a strong community of researchers is in place suggesting broad use of successfully developed methods. We are specifically interested in projects to develop reverse and/or forward genetics.
  2. Screening laboratory-scale culture collections for transformable marine microeukaryotes.

MMI will also consider projects to develop genetic tools and methods with other microeukaryotes that show promise for expanding the way the field can test hypotheses. If your idea does not fit category 1 or 2 above, please contact us prior to submitting your EOI.

MMI encourages EOIs from “inter-organismal” teams of researchers – i.e., complementary groups that have experience in a well-established model system and with a microeukaryote that is not currently genetically tractable – whose collaborative effort will bring innovative approaches to the field.

MMI invites you to send an expression of interest via email that briefly outlines a research project (one paragraph or less), using the following template:

  1. The lead researcher’s name, institution, and expertise.
  2. Indication of focus on genetic tools for diatoms (category 1 above) or laboratory culture screening for transformability (category 2 above).
  3. For category 1, the name of the organism(s); or, for category 2, the taxonomic group(s) to be screened. 
  4. A methodological or technical challenge that is hindering the development of a genetically manipulable marine microeukaryotic system that is ripe for solving and how you would address this challenge (3-5 sentences).
  5. The research team that would tackle this challenge, and why each team member’s expertise is relevant (one sentence per team member; please include institutional affiliations).

The opportunities that best align with MMI’s strategies and goals will be invited to submit proposals. MMI has allocated $7–10M to support this effort and anticipates making multiple, 2–3 year awards beginning in mid- 2015.

Please submit your EOI by Tuesday January 6, 2015 to Samantha Forde at samantha.forde@moore.org.

page1image24792

Post-doc w/ me, Jessica Green, Jay Stachowicz, and Jenna Lang on seagrass microbiomes

Postdoctoral Position in Microbial Ecology and Evolution
Jessica Green at the University of Oregon Green (http://pages.uoregon.edu/green/) is currently seeking a postdoctoral researcher to explore fundamental questions in microbial ecology and evolution. Applicants should have a PhD in a biological, computational, mathematical, or statistical field with extensive training using theory and/or modeling to understand the ecology and evolution of complex biological communities, and strong writing skills. Experience developing and applying quantitative phylogenetic ecological methods is highly desirable, but not explicitly required for candidates who have otherwise demonstrated strong quantitative skills.
The successful candidate will play a key role in the Seagrass Microbiome Project (http://seagrassmicrobiome.org) in collaboration among Jonathan Eisen https://phylogenomics.wordpress.com), Jay Stachowicz http://www-eve.ucdavis.edu/stachowicz/stachowicz.shtml, and Jenna Lang (http://jennomics.com/) at the University of California, Davis. The Seagrass Microbiome Project aims to integrate the long interest in seagrass ecology and ecosystem science with more recent work on microbiomes to produce a deeper, more mechanistic understanding of the ecology and evolution of seagrasses and the ecosystems on which they depend. Our studies of the community of microorganisms that live in and on seagrasses – the seagrass “microbiome” – will contribute to a broader understanding of host-microbe systems biology, and will benefit from ongoing University of Oregon research programs including the Microbial Ecology and Theory of Animals Center for Systems Biology (http://meta.uoregon.edu/) and the Biology and Built Environment Center (http://biobe.uoregon.edu/).
The position is available for 1 year with the possibility for renewal depending on performance. The start date is flexible. Please email questions regarding the position to Jessica Green (jlgreen).
To apply
A complete application will consist of the following materials:
(1) a brief cover letter explaining your background and career interests
(2) CV (including publications)
(3) names and contact information for three references
Submit materials to ie2jobs. Subject: Posting 14431
To ensure consideration, please submit applications by November 1, 2014, but the position will remain open until filled.
Women and minorities encouraged to apply. We invite applications from qualified candidates who share our commitment to diversity.
The University of Oregon is an equal opportunity, affirmative action institution committed to cultural diversity and compliance with the ADA. The University encourages all qualified individuals to apply, and does not discriminate on the basis of any protected status, including veteran and disability status.

Post-doc w/ me, Jessica Green, Jay Stachowicz, and Jenna Lang on seagrass microbiomes

Postdoctoral Position in Microbial Ecology and Evolution

Jessica Green at the University of Oregon Green (http://pages.uoregon.edu/green/) is currently seeking a postdoctoral researcher to explore fundamental questions in microbial ecology and evolution. Applicants should have a PhD in a biological, computational, mathematical, or statistical field with extensive training using theory and/or modeling to understand the ecology and evolution of complex biological communities, and strong writing skills. Experience developing and applying quantitative phylogenetic ecological methods is highly desirable, but not explicitly required for candidates who have otherwise demonstrated strong quantitative skills.

The successful candidate will play a key role in the Seagrass Microbiome Project (http://seagrassmicrobiome.org) in collaboration among Jonathan Eisen https://phylogenomics.wordpress.com), Jay Stachowicz http://www-eve.ucdavis.edu/stachowicz/stachowicz.shtml, and Jenna Lang (http://jennomics.com/) at the University of California, Davis. The Seagrass Microbiome Project aims to integrate the long interest in seagrass ecology and ecosystem science with more recent work on microbiomes to produce a deeper, more mechanistic understanding of the ecology and evolution of seagrasses and the ecosystems on which they depend. Our studies of the community of microorganisms that live in and on seagrasses – the seagrass “microbiome” – will contribute to a broader understanding of host-microbe systems biology, and will benefit from ongoing University of Oregon research programs including the Microbial Ecology and Theory of Animals Center for Systems Biology (http://meta.uoregon.edu/) and the Biology and Built Environment Center (http://biobe.uoregon.edu/).

The position is available for 1 year with the possibility for renewal depending on performance. The start date is flexible. Please email questions regarding the position to Jessica Green (jlgreen).

To apply

A complete application will consist of the following materials:

(1) a brief cover letter explaining your background and career interests

(2) CV (including publications)

(3) names and contact information for three references

Submit materials to ie2jobs. Subject: Posting 14431

To ensure consideration, please submit applications by November 1, 2014, but the position will remain open until filled.

Women and minorities encouraged to apply. We invite applications from qualified candidates who share our commitment to diversity.

The University of Oregon is an equal opportunity, affirmative action institution committed to cultural diversity and compliance with the ADA. The University encourages all qualified individuals to apply, and does not discriminate on the basis of any protected status, including veteran and disability status.