Tag Archives: assembly

PacBio Sequence Assembly Workshop

PacBio is hosting an evening symposium next week as part of another workshop I’m organizing on campus. All are encouraged to attend! Plenty of food available afterwards. PacBio Sequence Assembly Workshop Tuesday, December 17th 2013, 4 pm – 7 pm … Continue reading

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Nice new memory efficient metagenome assembly method from C. Titus Brown –

Interesting new #OpenAccess PNAS paper from C. Titus Brown: Scaling metagenome sequence assembly with probabilistic de Bruijn graphs.  Of course, if you follow Titus on Twitter or his blog you would know about this already because not only has he posted … Continue reading

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New publication from the lab: Assemblathon 1: A competitive assessment of de novo short read assembly methods

Aaron Darling from the lab is an author on a new paper just published: Assemblathon 1: A competitive assessment of de novo short read assembly methods.

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New paper from my lab (& the Facciotti lab): Mauve Assembly Metrics #Halophiles #Genomics

Just a quick post here. A new paper from my lab has come out in Bioinformatics. The paper is relatively simple. Titled “Mauve Assembly Metrics” it reports work of Aaron Darling and Andrew Tritt (with some minor contributions from me … Continue reading

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