Tag Archives: Phylogenomics

"Phylogeny driven approaches to genomics and metagenomics": slides w/ audio from my talk at #UCDavis 1/29

Gave a talk here at UC Davis last week. Alas, not my best talk – too rushed. But, anyway, here is a video of the slideshow w/ audio. Title “Phylogeny driven approaches to genomics and metagenomics”   ——– This is … Continue reading

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Worth a look: PhyloFacts FAT-CAT web server: ortholog identification & function prediction

Quick post.  This seems like a potentially useful resource and tool: The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification Abstract:The PhyloFacts ‘Fast Approximate Tree Classification’ (FAT-CAT) web server provides a novel approach to ortholog … Continue reading

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Sign up: SMBE Satellite Mtg. on Eukaryotic-Omics 4/29-5/2 at #UCDavis

Going to be good: Eukaryotes | SMBE Satellite Meeting on Eukaryotic -Omics – April 29 to May 2, UC Davis Conference Center No bias here – given that it is organized by Holly Bik in my lab and it is … Continue reading

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Guest post from Kimmen Sjölander about FAT-CAT phylogenomics pipeline

Below is a guest post from my friend and colleague Kimmen Sjölander, Prof. at UC Berkeley and phylogenomics guru.  Announcing the FAT-CAT phylogenomic annotation webserver. FAT-CAT is a new web server for phylogenomic prediction of function and ortholog identification and … Continue reading

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Worth a read: Jim Staley on a "Universal Species Concept" and the history of microbial species concepts

Interesting paper came up in my automated google searches for “phylogenomics”: Transitioning Toward a Universal Species Concept for the Classification of all Organisms | InTechOpen.  It is by Jim Staley who has been writing a lot about microbial species concepts in … Continue reading

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Slides and slideshow w/ audio from my talk at Bay Area Illumina User’s Meeting

Just quick post … gave a talk Thursday at the Bay Area Illumina User’s meeting.  I have posted my slides to Slideshare and a Video Slideshow with audio to Youtube. “Phylogenomic approaches to microbial diversity” Talk by Jonathan Eisen at … Continue reading

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Three talks, 1.5 days at #ISMB … phylogeny, phylogenomics, open science and more

Gave three talks in 1.5 days here in Long Beach as part of the satellite meetings associated with the “Intelligent Systems for Molecular Biology” (ISMB) 2012 Conference. I will write more about the meeting and the craziness of giving three … Continue reading

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BABS meeting at #UCDavis – “Phylogenomics and Systematics”

(Please respond to psward@ucdavis.edu if you plan to attend) BAY AREA BIOSYSTEMATISTS (BABS) MEETING Tuesday evening, 22 May 2012 at UC Davis, 1022 Life Sciences Building “PHYLOGENOMICS AND SYSTEMATICS” The genomics era holds great promise (and challenge) to systematics. There … Continue reading

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The Axis of Evol: Getting to the Root of DNA Repair with Philogeny

The Axis of Evol: Getting to the Root of DNA Repair with Philogeny  In 2005 I wrote an essay about my time in graduate school that was potentially going to be included in a special issue of Mutation Research in … Continue reading

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EVE198 / EVE161 Microbial Phylogenomics Course Spring 2012

EVE 198 – Spring Quarter 2012 – CRN 74485 – 3 units P/NP grading Microbial Phylogenomics:  The Evolutionary Diversification of Microbes and their Genomes Professor Jonathan Eisen     TR 1:40-3:00pm Room 1344 Storer Hall  Prerequisites for this EVE 198 … Continue reading

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